BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933491

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30032.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   204    3e-52


> AT2G30032.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; Has 30201 Blast hits to 17322 proteins in 780 
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi 
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 
(source: NCBI BLink). | chr2:12819529-12819654 REVERSE LENGTH=126
Length=126

 Score =  204 bits (110),  Expect = 3e-52
 Identities = 121/126 (96%), Gaps = 2/126 (2%)
 Strand=Plus/Plus

Query  79   TGTTAC-AAAATTTTATTTTATTTGTTTGCTTCTGGGAAGATCTCTGCCCTTCCGTGAAC  137
            |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2    TGTTACGAAAA-ATTATTTTATTTGTTTGCTTCTGGGAAGATCTCTGCCCTTCCGTGAAC  60

Query  138  GTGAAGTACTATATTAACGGTCTACCACTTGTATGGATATCCTTTAGATTAGAGTCCAAA  197
            |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct  61   GTGAAGTACTATATTAACGGTCCACCACTTGTATGGATATCCTTTAGATTAGAATCCAAA  120

Query  198  AAATAA  203
            ||||||
Sbjct  121  AAATAA  126



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10154085298


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5