BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933494
Length=703
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30060.1 | Symbols: | Pleckstrin homology (PH) domain super... 1042 0.0
AT1G07140.1 | Symbols: SIRANBP | Pleckstrin homology (PH) domai... 606 7e-173
> AT2G30060.1 | Symbols: | Pleckstrin homology (PH) domain superfamily
protein | chr2:12826915-12828919 FORWARD LENGTH=1142
Length=1142
Score = 1042 bits (564), Expect = 0.0
Identities = 647/686 (94%), Gaps = 10/686 (1%)
Strand=Plus/Plus
Query 7 TTGATTTTAATACGATGGCGAGCATTAGCAACGAGCCAGAGCGTGAGCACAGAGACGAAG 66
|||| ||| | || ||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 108 TTGA-TTTGACACTATGGCGAGCATTAGCAACGAGCCCGAGCGTGAGAACAGAGACGAAG 166
Query 67 AAGAGACTGGAGCCAACGAAGATGAAGACACCGGTGCTCAGGTTGCTCCAATCGTCAGGC 126
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 167 AAGAGACTGGAGCCAACGAAGATGAAGACACCGGTGCTCAGGTTGCTCCTATCGTCAGGC 226
Query 127 TTGAAGAAGTCGCCGTCACCACCGGTGAAGAAGACGAAGACACCATCCTCGATCTGAAAT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TTGAAGAAGTCGCCGTCACCACCGGTGAAGAAGACGAAGACACCATCCTCGATCTGAAAT 286
Query 187 CGAAGTTGTATCGATTCGATAAAGATGGAAGTCAGTGGAAGGAGAGAGGTGCTGGTACTG 246
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 CGAAGTTGTATCGATTTGATAAAGATGGAAGTCAGTGGAAGGAGAGAGGTGCTGGTACTG 346
Query 247 TTAAGTTCTTAAAACATAGAGTTTCTGGGAAGATTCGTCTTGTTATGAGGCAATCGAAAA 306
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 347 TTAAGTTTTTGAAACATAGAGTTTCTGGGAAGATTCGTCTCGTTATGAGGCAATCGAAAA 406
Query 307 CTTTGAAGATCTGTGCTAATCATCTTGTTGGATCGGGTATGAGTGTTCAGGAACACGCTG 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CTTTGAAGATCTGTGCTAATCATCTTGTTGGATCGGGTATGAGTGTTCAGGAACACGCTG 466
Query 367 GGAATGATAAGTCTTGTGTTTGGCACGCTCTTGATTTCTCCGATGGAGAATTGAAGGATG 426
||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||
Sbjct 467 GGAATGATAAGTCTTGTGTATGGCACGCTCGTGATTTCTCCGATGGTGAATTGAAGGATG 526
Query 427 AGCTATTCTGTATCCGTTTTGCTTCAGTTGAGAACTGCAAAGCTTTTATGCAAAAGTTCA 486
|||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 527 AGCTCTTCTGTATCCGGTTTGCTTCAGTTGAGAATTGCAAAGCATTTATGCAAAAGTTCA 586
Query 487 AGGAAGTAGCTGAATCTGAAGAAGAGAAAGAAGAGAGCAAAGACGCCTCTGATACCGCTA 546
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 587 AGGAAGTAGCTGAATCTGAAGAAGAGAAAGAAGAGAGCAAAGATGCCTCTGATACCGCTG 646
Query 547 GTCTTCTTGAGAAGTTAACAGTggaagagaagaaaaccgaggagaaaccagcggagaaag 606
|||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||||| |
Sbjct 647 GTCTTCTTGAGAAGTTAACAGTGGAAGAGAAGGAAAGTGAGAAGAAACCAGTGGAGAAGG 706
Query 607 cagaggaaaaggaggaaaacaagaagagTGAAGCTGTTGACGAAAAGAAAACAGAGGAGT 666
|||||||||| | |||| || | |||||||||||| |||||||||||||||||||
Sbjct 707 CAGAGGAAAAC-A--AAAA---GA-G--TGAAGCTGTTGAAGAAAAGAAAACAGAGGAGT 757
Query 667 CTGTTACCTCAACTTAAGATGCATGC 692
||||| ||||| ||||||||||||||
Sbjct 758 CTGTTCCCTCAGCTTAAGATGCATGC 783
> AT1G07140.1 | Symbols: SIRANBP | Pleckstrin homology (PH) domain
superfamily protein | chr1:2191723-2193793 REVERSE LENGTH=1429
Length=1429
Score = 606 bits (328), Expect = 7e-173
Identities = 489/566 (86%), Gaps = 14/566 (2%)
Strand=Plus/Plus
Query 35 CAACGAGCCAGAGCGTGAGCACAGAGACGAAGAAGAGACTGGAGCCAACGAAGATGAAGA 94
|||||| || |||| |||||||||||||| |||||| | ||||| ||||| ||||| ||
Sbjct 114 CAACGAACCCGAGCACGAGCACAGAGACGAGGAAGAGGCCGGAGCTAACGAGGATGAGGA 173
Query 95 CACCGGTGCTCAGGTTGCTCCAATCGTCAGGCTTGAAGAAGTCGCCGTCACCACCGGTGA 154
|||||| |||||||| ||||| ||||| |||||||| || || |||||||| ||||| ||
Sbjct 174 CACCGGAGCTCAGGTCGCTCCGATCGTTAGGCTTGAGGAGGTTGCCGTCACTACCGGCGA 233
Query 155 AGAAGACGAAGACACCATCCTCGATCTGAAATCGAAG-TTGTATCGATTCGATAAAGATG 213
||||||||||| || |||| ||||||||||||||| || |||||||||||||| ||||
Sbjct 234 GGAAGACGAAGATGCCGTCCTTGATCTGAAATCGAAGCTT-TATCGATTCGATAAGGATG 292
Query 214 -GAAGTCAGTGGAAGGAGAGAGGTGCTGGTACTGTTAAGTTCTTAAAACAT-AGAGTTTC 271
||| |||||||||||||||||| ||||||||||| ||||||||||| ||| ||| |
Sbjct 293 CGAA-TCAGTGGAAGGAGAGAGGAGCTGGTACTGTGAAGTTCTTAAAGCATAAGA-ACAC 350
Query 272 TGGGAAGATTCGTCTTGTTATGAGGCAATCGAAAACTTTGAAGATCTGTGCTAATCATCT 331
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 351 TGGGAAGATTCGTCTCGTTATGAGGCAATCTAAAACTTTGAAGATCTGTGCTAATCA-CT 409
Query 332 T-GTTGGATCGGGTATGAGTGTTCAGGAACACGCTGGGAATGATAAGTCTTGTGTTTGGC 390
| ||| |||||| ||||||||||||||||||| ||||||||| ||||| ||||| ||||
Sbjct 410 TCGTTAAATCGGGCATGAGTGTTCAGGAACACGTTGGGAATGAAAAGTCATGTGTGTGGC 469
Query 391 ACGCTCTTGA-TTTCTCCGATGGAGAATTGAAGGATGAGCTATTCTGTATCCGTTTTGCT 449
|||||| ||| ||| | ||||| ||| | ||||||||||| ||||||||||| ||||||
Sbjct 470 ACGCTCGTGACTTT-GCTGATGGTGAACTCAAGGATGAGCTTTTCTGTATCCGATTTGCT 528
Query 450 TC-AGTTGAGAACTGCAAAGCTTTTATGCAAAAGTTCAAGGAAGTAGCTGAATCTGAAGA 508
|| | ||||||| |||||| | ||||||||||||||||||||||| ||||| ||||||||
Sbjct 529 TCTA-TTGAGAATTGCAAAACATTTATGCAAAAGTTCAAGGAAGTTGCTGAGTCTGAAGA 587
Query 509 AGAGAAAGAAGAGAGCAAAGACGCCTCTGATACCGCTAGTCTTCTTGAGAAGTTAACAGT 568
||||||||||||||||||||| ||| |||| || ||| | ||||||||||| || || ||
Sbjct 588 AGAGAAAGAAGAGAGCAAAGATGCCGCTGACACTGCTGGCCTTCTTGAGAAATTGACTGT 647
Query 569 ggaagaga-agaaaaccgaggagaaa 593
|||||||| | ||||| |||||||||
Sbjct 648 GGAAGAGACA-AAAACGGAGGAGAAA 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34058751666
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5