BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933499
Length=2743
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30100.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 2156 0.0
AT2G30105.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-r... 1803 0.0
> AT2G30100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:12847828-12849669 FORWARD LENGTH=1661
Length=1661
Score = 2156 bits (1167), Expect = 0.0
Identities = 1344/1428 (94%), Gaps = 17/1428 (1%)
Strand=Plus/Plus
Query 50 TTCGTTGACCT-TCTC-ACCGATTTCTCTCCGAAGATTCCGT-CCCCGACTTCATCGTAA 106
|||||||| || |||| | |||||||||||||| |||||| | |||||||||||||| ||
Sbjct 24 TTCGTTGA-CTATCTCGA-CGATTTCTCTCCGACGATTCC-TCCCCCGACTTCATCGAAA 80
Query 107 TCACAGCGTAAAACCCAATTCCCGAATCATCATCTGCAATCTGAAATC-AAACTACTCCG 165
||||||||||||||||||||||||||||| | |||||||||||| | ||||||||| |
Sbjct 81 CCACAGCGTAAAACCCAATTCCCGAATCAT-A--TGCAATCTGAAA-CTAAACTACTCTG 136
Query 166 CTGGGAAATTTCGTGAGCTCGGAGGATTATCTCGTTCCGTGGAGCTAGACCAATTCATCA 225
|||| |||||||| ||| | | ||| |||| ||||||||||||||||||||||||||||
Sbjct 137 CTGGAAAATTTCGCGAGAT--G-GGACTATCACGTTCCGTGGAGCTAGACCAATTCATCA 193
Query 226 CAAGCGAGGAAGAAGAAGAAGAAGCAGAGGAAATAGGAGAAGGGTTTTTCGAAGCGATTG 285
|||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||||||||
Sbjct 194 CAAGCGAGGAGGAAGAAGGAGAAGCAGAGGAGATAGGAGAAGGATTTTTCGAAGCGATTG 253
Query 286 AGGAATTAGAGAGGATGACTAGAGAACCATCAGATATTCTCGAAGAGATGAATCATCGAT 345
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 254 AGGAACTAGAGAGGATGACTAGAGAACCATCAGATATACTCGAAGAGATGAATCATCGAT 313
Query 346 TATCTTCTCGAGAATTGCAATTGATGCTTGTCTATTTCGCACAAGAAGGTAGAGATTCTT 405
|||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 314 TATCTTCTAGAGAATTGCAATTGATGCTTGTTTACTTCGCACAAGAAGGTAGAGATTCAT 373
Query 406 GGTGTACTTTAGAAGTGTTTGAATGGTTGAAAAAGGAAAATAGAGTTGATGAAGAGATAA 465
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 374 GGTGTACTTTAGAAGTGTTTGAATGGTTGAAAAAGGAGAATAGAGTTGATGAAGAGATAA 433
Query 466 TGGAGTTAATGGTTTCGATTATGTGTGGTTGGGTTAAGAAATTGATTCAAGAGGAATGTG 525
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 434 TGGAGTTAATGGTTTCGATTATGTGTGGTTGGGTTAAGAAATTGATTGAAGATGAATGTA 493
Query 526 ATGCACACCAAGTGTTCGACTTATTGATTGAGATGGATTGTGTTGGTTTAAAACCTGGTT 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 ATGCACACCAAGTGTTCGACTTATTGATTGAGATGGATTGTGTTGGTTTAAAACCTGGTT 553
Query 586 TTAGTATGATGGAGAAAGTTATTGCTTTGTATTGTGAGATGGGGAAGAAAGAAAGTGCGG 645
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TTAGTATGATGGACAAAGTTATTGCTTTGTATTGTGAGATGGGGAAGAAAGAAAGTGCGG 613
Query 646 TTTTGTTTGTGAAGGAGGTTTTAAGGAGGAGAGATGGTTTTGGGTATAGTGTTGTTGGTG 705
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 614 TTTTGTTTGTCAAGGAGGTTTTAAGAAGGAGAGATGGTTTTGGTTATAGTGTTGTTGGTG 673
Query 706 GTGGT--T-CTGAAGGTAGAAAAGGTGGACCAGTTGGGTATCTTGCTTGGAAATTGATGG 762
||||| | |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 674 GTGGTGGTTCTGAAGGTAGAAAAGGTGGACCTGTTGGGTATCTTGCTTGGAAATTTATGG 733
Query 763 TTGATGGAGACTATAAGAAGGCAGTTGATATGGTTATGGAGTTAAGACTTTCAGGGCTGA 822
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TTGATGGAGATTATAGGAAGGCAGTTGATATGGTTATGGAGTTAAGACTTTCAGGGCTGA 793
Query 823 AGCCAGAAGCTTATAGCTATCTAATTGCGATGACAGCAATTGTGAAAGAGCTGAATAGTC 882
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 794 AACCAGAAGCGTACAGCTATCTTATTGCGATGACAGCTATAGTGAAAGAGCTGAATAGTC 853
Query 883 TTGGGAAGACATTACGCGAGTTGAAACGCTTTACACGGGCTGGTTTTGTTGCTGAGATCG 942
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 854 TTGGAAAGACATTACGCGAGTTGAAACGCTTTGCACGGGCTGGTTTTGTTGCTGAGATTG 913
Query 943 ATGATCATGATAGGGTACTCATTGAGAAGTACCAATCGGAAACATTATCCCGCGGACTGC 1002
||||||| ||||||||||||||||||||||| ||||| ||||||||||| || |||||||
Sbjct 914 ATGATCACGATAGGGTACTCATTGAGAAGTATCAATCAGAAACATTATCTCGTGGACTGC 973
Query 1003 AATTAGCCACTTGGGCGGTTGAGGAAGGTCAAGAAAATGATTCCATAATTGGGGTGGTCC 1062
| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 974 AGTTAGCAACTTGGGCGGTTGAGGAAGGCCAAGAAAATGATTCCATTATTGGGGTGGTCC 1033
Query 1063 ATGAGAGGCTCCTCGCAATGTATATATGTGCGGGACGTGGACCAGAAGCAGAGAAACAAC 1122
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1034 ATGAGAGGCTACTCGCTATGTATATATGTGCGGGACGTGGACCAGAAGCAGAGAAACAGC 1093
Query 1123 TCTGGAAGATGAAACTTGCAGGGAGAGAACCCGAAGCTGACCTCCACGACATCGTTATGG 1182
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1094 TCTGGAAGATGAAACTTGCAGGGAGAGAACCTGAAGCTGACCTCCACGACATTGTTATGG 1153
Query 1183 CGATCTGCGCTTCACAGAAAGAGGTTAATGCAGTTTCACGGCTTCTGACACGGGTGGAGT 1242
||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||
Sbjct 1154 CGATCTGCGCTTCACAGAAAGAGGTTAATGCAGTTTCTCGGCTACTGACACGAGTTGAGT 1213
Query 1243 TCATGGGATCTCAGAGAAAGAAGAAGACTCTGTCTTGGTTACTCAGAGGGTATGTAAAAG 1302
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1214 TCATGGGATCTCAGAGAAAGAAGAAGACTCTGTCATGGTTGCTCAGAGGGTATGTGAAAG 1273
Query 1303 GAGGGCACTTTGAAGAAGCTGCAGAGACACTGGTATCGATGATCGACTCTGGTTTGCATC 1362
|||||||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1274 GAGGGCACTTCGAAGAGGCTGCAGAGACATTGGTATCGATGATCGACTCTGGGTTGCATC 1333
Query 1363 CGGAGTATATTGATCGAGTGGCTGTGATGCAAGGAATGACAAGGAAGATTCAACGGCCGA 1422
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1334 CGGAGTATATTGATCGAGTGGCTGTGATGCAAGGAATGACAAGGAAGATCCAACGGCCGA 1393
Query 1423 GAGATGTTGAAGCATATATGAGTCTGTGCAAGAGGCTCTTTGATGCTG 1470
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1394 GAGATGTTGAAGCATATATGAGTCTGTGCAAGAGGCTCTTTGACGCTG 1441
> AT2G30105.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-rich
repeat, typical subtype (InterPro:IPR003591), Leucine-rich
repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626),
Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis
thaliana protein match is: Leucine-rich repeat (LRR) family
protein (TAIR:AT5G07910.1). | chr2:12849766-12852092 FORWARD
LENGTH=1377
Length=1377
Score = 1803 bits (976), Expect = 0.0
Identities = 1095/1153 (95%), Gaps = 5/1153 (0%)
Strand=Plus/Plus
Query 1593 ATTGTGATGGAGCTCGAAGATCCAACAATGGCAGATTCCACGATTAAGCTTACCGTCAAA 1652
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 63 ATTGTGATGGAGCTCGAAGATCCAACAATGGCAGATTCCACGATTAAGCTAACAGTCAAA 122
Query 1653 TTCGGAGGCAGATCAATACCACTTTCGGTATCACAAGATTGTACAGTCAAAGATCTTAAG 1712
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 123 TTCGGAGGCAAATCAATACCACTTTCGGTATCACCAGATTGTACAGTCAAAGATCTTAAG 182
Query 1713 TCTCTGTTACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAGGT 1772
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TCTCAGTTACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAGGT 242
Query 1773 AAGGTTTTGGTTGAAACGTCGACTTTGAAGCAATCTGATGTGGGAAGTGGTGCCAAACTC 1832
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 243 AAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTGGAGCTAAACTC 302
Query 1833 ATGTTAATGGCTTCTCAAGGTCTGCATCAAGGGGAAGGTCCAGTACTTAAGGAAGCTAGT 1892
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 303 ATGTTAATGGCTTCTCAAGGTCTGCATCAAGGGGAAGGTCCAATACTTAAGGAAGCTAGT 362
Query 1893 ACAAGGCCAATCTCTAGAACTGTTGTATCTGATAAAGTAGATCAGAGAAAACCTAGTCTC 1952
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 363 ATAAGGCCAATCTCTAGAACTGTTGTATCTGATAAAGTAGATCAGAGAAAGCCTAGTGTA 422
Query 1953 CTTGTAGACAAGAAGCGCACTGATCGATGGAAAGCCACAGGAGTTATTGCTTTAGCTCAA 2012
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CTTGTAGACAAGAACCGCACTGATCGATGGAAAGCCACAGGAGTTATTGCTTTAGCTCAA 482
Query 2013 GCCAATTTGAAGGAAATACCCGAAGAAGTCTGGGACTGTGGATCTGGAGTCAGAGTACTT 2072
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 483 GCCAATTTGAAGGAAATACCTGAAGAAGTGTGGGACTGTGGATCTGGAGTCAGAGTACTT 542
Query 2073 GACATCAGTGAAAATTTCATTAAAGAAGTACCTACCAAAATCAGCTCCTTTGGTTCTATG 2132
||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 543 GACATTAGTGAAAACTTCATTAAAGAAGTACCTGCCAAAATCAGCTCCTTTGGTTCTATG 602
Query 2133 CAGAAATTGCTCCTTCAAGGAAATGGTCTATCCGATGAATCCATTCAATGGGAAGGGATA 2192
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 603 CAGAAATTGTTCCTTCAAGGAAATGGTCTGTCCGATGAATCCATTCAATGGGAAGGGATA 662
Query 2193 GCATCTCTGAAGCGCCTGATGCTTCTGTCCATTAGCCATAACAATCTAACTGTTCTGCCA 2252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GCATCTCTGAAGCGCCTGATGCTTCTGTCCATTAGCCATAACAATCTAACTGTTCTGCCA 722
Query 2253 GCAGCAGTGGGTTCACTGATATCTCTTAGACAACTTGATGTCACCAACAACAAGTTGAAA 2312
||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 723 TCAGCAATGGGTTCACTGACGTCTCTTAGACAGCTTGATGTCACCAACAACAAGTTGACA 782
Query 2313 AGTCTACCAAATGAGTTAGGACTTCTTACACAGCTTGAGATCTTGAAAGCAAACAATAAC 2372
|||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||| |||
Sbjct 783 AGTCTACCGAATGAGTTAGGACTTCTGACGCAGCTTGAGATTTTGAAAGCCAACAACAAC 842
Query 2373 AGAATAACTAGCCTTCCCGAGAGTATCGGAAACTGTTCCTTCCTCATGGAGGTTGATCTT 2432
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 843 AGAATAACTAGTCTTCCTGAGAGTATCGGAAACTGTTCATTCCTCATGGAGGTTGATCTT 902
Query 2433 TCAGCAAACATTCTATCAGAACTTCCCGAGACATTCACCAAACTGCGCAATCTAAGGACA 2492
||||| || ||| |||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 903 TCAGCTAATATTATATCAGAACTTCCCGAGACATTCACCAAACTGCGTAATCTAAAGACG 962
Query 2493 CTGGAGCTGAACAACACGGGATTGAAGACGCTGCCATCAGCTTTATTTAAGATGTGTTTG 2552
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 963 CTGGAGCTGAATAACACGGGATTGAAGACGCTGCCATCGGCTTTATTTAAGATGTGTTTG 1022
Query 2553 CAGCTCTCAACTTTAGGACTCCACAACACAGAGATAACCGTTGAAGTTCTCCGCCAGTTC 2612
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1023 CAGCTCTCAACTTTAGGTCTCCACAACACAGAGATAACCGTTGAATTTCTCCGCCAGTTC 1082
Query 2613 GAGGGATGGGATGATTTTGATGAAAGAAGACGTACCAAGCATCAGAAA-CAGCTTGATTT 2671
||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1083 GAGGGATATGATGATTTTGATGAAAGAAGACGTACCAAGCATCA-AAAGCAGCTTGATTT 1141
Query 2672 TCGGGTTGTTGGG-TCTGGCCAATTCGATGAAGGTGCTGATAAATCTTGGTGATCGAGTC 2730
||| ||||| ||| |||||||||||||| ||||| |||||||||||||||||||| || |
Sbjct 1142 TCGTGTTGT-GGGATCTGGCCAATTCGACGAAGGCGCTGATAAATCTTGGTGATCAAGCC 1200
Query 2731 AAGTCTGAGTCTC 2743
||||| |||||||
Sbjct 1201 AAGTC-GAGTCTC 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136253417188
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5