BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933502

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16340.1 | Symbols: ATPDR1, PDR1 | pleiotropic drug resistan...   239    1e-62


> AT3G16340.1 | Symbols: ATPDR1, PDR1 | pleiotropic drug resistance 
1 | chr3:5539897-5546417 FORWARD LENGTH=4405
Length=4405

 Score =  239 bits (129),  Expect = 1e-62
 Identities = 153/165 (93%), Gaps = 0/165 (0%)
 Strand=Plus/Plus

Query  55    GTGAAGAACACAATTGACACAAGAAGAACTGTTGTCTACACAATCCACCAACCTAGCATT  114
             |||| ||| ||| |||||||| |||||||||| |||| ||||||||||||||||||||||
Sbjct  3022  GTGAGGAATACAGTTGACACAGGAAGAACTGTGGTCTGCACAATCCACCAACCTAGCATT  3081

Query  115   GATATCTTTGAAGCTTTTGATGAACTTCTTCTTATAAAGAGAGGAGGACAAGTGATTTAC  174
             ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| 
Sbjct  3082  GATATCTTTGAAGCTTTTGATGAACTTCTTCTTTTGAAGAGAGGAGGACAAGTGATTTAT  3141

Query  175   ACTGGTCCTTTAGGTCGAAACTCTCACAAGATTATCGGATATTTC  219
              ||||||||||||||| |||||||||||||||||||| |||||||
Sbjct  3142  GCTGGTCCTTTAGGTCAAAACTCTCACAAGATTATCGAATATTTC  3186



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11913456513


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5