BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933524

Length=589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30270.1 | Symbols:  | Protein of unknown function (DUF567) ...   843    0.0  


> AT2G30270.1 | Symbols:  | Protein of unknown function (DUF567) 
| chr2:12907841-12909261 REVERSE LENGTH=939
Length=939

 Score =  843 bits (456),  Expect = 0.0
 Identities = 541/581 (93%), Gaps = 9/581 (2%)
 Strand=Plus/Plus

Query  2    TGTTA-GAGAGACTATGTGAATGGCGGATTCCGATACTCCTTATAACCCCGACCTTGAGG  60
            |||||  ||||||||||| |||||| |||||||| ||||| ||| ||||||||| |||||
Sbjct  185  TGTTATTAGAGACTATGTAAATGGCTGATTCCGAGACTCCGTATCACCCCGACCCTGAGG  244

Query  61   ATCTCCGGCGAATACCAGTTGATCTCTTCGCTTCCAAGAAA-CTTCCCGGACTTTCCTCC  119
            |||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct  245  ATCTCCGGCGTATACCAGTCGATCTCTTCGCTTCCAA-AAAGCTTCCCGGACTTTCCTCC  303

Query  120  GGCGATCTCGGGTTTGCCGATTCTTCTGAAAATCTCGTCTTCATCCTCCGCAAAtcttct  179
            ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct  304  GGCGATCTCGGATTTGCCGATTCTTCCGAACATCTCGTCTTCATCCTCCGCAAATCTTCT  363

Query  180  tcctccttgaaatctctccttgattcctccggtgttcctctcttctccatctctcgtctc  239
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  364  TCCTCCTTGAAATCTCTCCTTGATTCCTCCGGAGTTCCTCTCTTCTCCATCTCTCGTCTC  423

Query  240  cACAATGGAATGTGGGAGTTACATAAAGGAGATGTCGAAAAGCGTAAGGAGTTGGTTCTA  299
            ||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct  424  CACAATGGAGTGTGGGAATTACATAAAGGAGATGTGGAAAAGCGTAAGGATTTGGTTCTA  483

Query  300  ACGGCGAAGCGGACATCGAACAA-ATTCAGTAAGACAGAGTTAAAGGTCTCTTTTGCAGG  358
            |||| ||||||||||||||| || ||||||||||||||||| | ||||||||||||| ||
Sbjct  484  ACGGTGAAGCGGACATCGAA-AAGATTCAGTAAGACAGAGTCAGAGGTCTCTTTTGCTGG  542

Query  359  AGAATCGTC-GCAACATCTTGTTATCAAAGGTTGT-CCCTTTCAGAAATCATGTACCATT  416
            ||||||||| | || ||||||||||||||||| || |||||||||||||| |||||||||
Sbjct  543  AGAATCGTCCGAAA-ATCTTGTTATCAAAGGT-GTTCCCTTTCAGAAATCTTGTACCATT  600

Query  417  TATAATCAAGATTCCATTGTTGCTCAGACGAGTTTGATGTACAAGCTGAGACAGATTTAC  476
            |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  601  TATAGTCAAGATTCCATTGTTGCACAGACGAGTTTGATGTACAAGCTGAGACAGATTTAC  660

Query  477  GTAGGAAGAAGCAAGTTCCGGTTAACGATATTTCCAGGATCCATCGATCATTCTCTAGTA  536
            ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct  661  GTAGGGAGAAGCAAGTTCCGGTTAACGATATTTCCTGGATCCATCGATCATTCACTAGTA  720

Query  537  GTAGCAATGGTTGCTATGTTTCTTCAAGGATGAAAGTGAAA  577
            || ||||||||||| || |||||||||||||||||||||||
Sbjct  721  GTCGCAATGGTTGCCATATTTCTTCAAGGATGAAAGTGAAA  761



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28332058908


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5