BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933537
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30380.1 | Symbols: | Plant protein of unknown function (DU... 1319 0.0
> AT2G30380.1 | Symbols: | Plant protein of unknown function (DUF641)
| chr2:12948284-12950573 FORWARD LENGTH=1560
Length=1560
Score = 1319 bits (714), Expect = 0.0
Identities = 900/986 (91%), Gaps = 27/986 (3%)
Strand=Plus/Plus
Query 24 ATGGAGAATGCCGTTGCTAAAACATCGAGTCCATCTTCGAATATATCAGAAATCATCTCC 83
||||| |||||||||| ||||| ||| |||||||||||||||||||||||| | ||||||
Sbjct 1 ATGGACAATGCCGTTGTTAAAAGATCAAGTCCATCTTCGAATATATCAGAAGTTATCTCC 60
Query 84 AAGTTCGCTAAAGTCTGCAAATTTAGATCCATTGGTGTGTTCCCTGACCAAAAGTCGAAT 143
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 AAGTTCGCTAAAGTCTGCAAATTTAGATCCATTGGTGTGTTCCCTGACCAAAA---G--- 114
Query 144 TCCAACGACCTTTGTGAAGTAGAAATCTTGGTGGATGATAAAGCTAAGGAAACTGAAG-T 202
||| | | || ||| | || |||||||||||||||||||| || ||||||| || |
Sbjct 115 TCC-A--A---TT-CGAA-T-GAGATCTTGGTGGATGATAAAGCAAAAGAAACTG-AGAT 164
Query 203 TTGTGATTTTAATCACAAACCCT-TTACAAAGATTCAAACTTTTTGTTGGGATGATGATG 261
||||||||| ||||||||||||| || ||| ||||||||||||| |||||||||||| ||
Sbjct 165 TTGTGATTTCAATCACAAACCCTCTT-CAATGATTCAAACTTTTAGTTGGGATGATGGTG 223
Query 262 AGATATGGAAGCTTTTCGACATGGTTTCAGCGCTTAAGCTTGCTTATGTTGAGTTTCAAC 321
|||||| ||||||||||||||| |||||| |||||||||| || ||| ||||||||||||
Sbjct 224 AGATATCGAAGCTTTTCGACATTGTTTCATCGCTTAAGCTAGCGTATCTTGAGTTTCAAC 283
Query 322 AAGCTCATTTGCCTTATGATCCAGATAAGATCATTGAAGCGGACAACCTCGTCGTGTCTC 381
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 284 AAGCTCATTTGCCTTATGATCCTGACAAGATCATTGAAGCAGACAACCTCGTCGTGTCTC 343
Query 382 AGCTGGAGGCTTTACGCAGAATCAAGCGTCTCTACCTCAAAACGAAACAGCTCAACGCGA 441
|||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |
Sbjct 344 AGCTCGAGGCTTTACGAAGAATCAAGCGTCTCTATCTCAAAACGATACAGCTCAACGCAA 403
Query 442 AGAAGACCGAGTTTGCTGCTTCTTGTTTGAAT-GGATTGAGAGATGAGATTGAAGTGAAT 500
||||||||||| ||||||||||||||||| || || |||||| |||||||||||||||||
Sbjct 404 AGAAGACCGAGATTGCTGCTTCTTGTTTGGATAGG-TTGAGATATGAGATTGAAGTGAAT 462
Query 501 GAGAAGGAACTGGAGAAACTTAAGGCACAAGTGAGAGCAAAGGAGAGTGAGATACACTCT 560
|||||| | ||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 463 GAGAAGCATTTGGAGAAACTTAAAGCACAAGTGAGAGCTAAGGAGAGTGAGATACACTCT 522
Query 561 TTGA--AGGAAAGATTAGATTGTTTGGTTGCAGAGAATAGGAAACAT-GAAGAGAGGATT 617
|||| | |||| | ||| ||||||||||||||||||||||||| | ||| | ||||||
Sbjct 523 TTGATTAAGAAACA--AGAATGTTTGGTTGCAGAGAATAGGAAAC-TCGAAAACAGGATT 579
Query 618 GTGAGTGTTTCTTCGTTTCAATTCGCTTTTCGAGCTGCTTCTAAGGCGGTTCACGACTTT 677
|||||||| ||||| ||| |||||||||||||||||||||| ||| ||||||||||||||
Sbjct 580 GTGAGTGTATCTTCCTTTGAATTCGCTTTTCGAGCTGCTTCAAAGTCGGTTCACGACTTT 639
Query 678 TCGAAGCCATTGATCACTCTGATGAAAGCTACAGATTGGAATTTGGACAAGGCAGTGGAA 737
| |||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||
Sbjct 640 GCAAAGCCATTGATCACCCTGATGAAAGCTACAGATTGGAACTTGGAGAAAGCAGTGGAA 699
Query 738 TCTATAGTTGGAAATGTAACATTTGCTAAGACCTCAGATAAGAAGTATGCTTTTGAGTCA 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 TCTATAGTTGGAAATGTAACATTTGCTAAGACCTCAGATAAGAAGTATGCTTTTGAGTCA 759
Query 798 TACATTGTTCGGAGAATGTTTCACGGCATTAAGCTTAATCCATGTGATGTGACCGAACTA 857
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 760 TACATTGTTCGGAGAATGTTTCACGGCATAAAGCTTAATCCATGTGATGTGACCGAACTA 819
Query 858 ATGAGCTTCGATGATCCATTGGACGCGTTAACAGCGTTTCCAAATTCCGCGTTTTCAAGA 917
||||| ||||||||||| || |||||||||||||||||| || |||||||||||||||||
Sbjct 820 ATGAGTTTCGATGATCCTTTAGACGCGTTAACAGCGTTTTCAGATTCCGCGTTTTCAAGA 879
Query 918 TTCTGCGGTCAGAAGTATCTTTTAGTTGTTCATCCATCGATGGAGGCTTCATTCTTTGGG 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 TTCTGCGGTCAGAAGTATCTTTTAGTTGTTCATCCATCGATGGAGGCTTCATTCTTTGGG 939
Query 978 AATATGGATATGAGGGGACTAGTTTT 1003
||| ||||||||||||||||||||||
Sbjct 940 AATTTGGATATGAGGGGACTAGTTTT 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64306898145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5