BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933542
Length=351
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily prot... 418 2e-116
AT2G30424.1 | Symbols: TCL2 | Homeodomain-like superfamily prot... 248 2e-65
AT5G53200.1 | Symbols: TRY | Homeodomain-like superfamily prote... 195 3e-49
> AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily protein
| chr2:12960827-12962162 REVERSE LENGTH=696
Length=696
Score = 418 bits (226), Expect = 2e-116
Identities = 300/334 (90%), Gaps = 12/334 (4%)
Strand=Plus/Plus
Query 3 TTCTTATACTTTCCACAGTAGTTATGGATAATACCAA----C--CGTCTTCGTCGCGGTC 56
||||| || ||| | |||||||||||||||||||||| | ||||||||||||||||
Sbjct 227 TTCTTCTA-TTTTC-CAGTAGTTATGGATAATACCAACCGTCTTCGTCTTCGTCGCGGTC 284
Query 57 GCAGTTTTAGGCAAACCAAGTTCACTAGATCGCGACATGACTCCGAAGAAGTGAGTAGCA 116
|||| |||||||||| ||||||||| |||| ||| ||||||| ||||||||||||||||
Sbjct 285 CCAGTCTTAGGCAAACTAAGTTCACTCGATCCCGATATGACTCTGAAGAAGTGAGTAGCA 344
Query 117 TCGAATGGGAGTTTATCAGTATGACCGAACAAGAGGAAGATCTCATCTCTCGAATGCACA 176
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 345 TCGAATGGGAGTTTATCAGTATGACCGAACAAGAAGAAGATCTCATCTCTCGAATGTACA 404
Query 177 GACTTGTCGGTGATAGGTGGGATTTAATAGCAGGAAGAGTGGTCGGACGAAAGGCAAATG 236
||||||||||| |||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 405 GACTTGTCGGTAATAGGTGGGATTTAATAGCAGGAAGAGTCGTAGGAAGAAAGGCAAATG 464
Query 237 AGATTGAGAGATTTTGGATTATGAGAAACTCTGACT-TTTTCTCCCACAAACGACGACA- 294
|||||||||||| |||||||||||||||||||||| |||| || |||||||||||||
Sbjct 465 AGATTGAGAGATACTGGATTATGAGAAACTCTGACTATTTT-TCTCACAAACGACGACGT 523
Query 295 CTTTAACAATTCTCCCtttttttCTTCTCCTCCT 328
||| || |||||||||||||||||| || |||||
Sbjct 524 CTT-AATAATTCTCCCTTTTTTTCTACTTCTCCT 556
> AT2G30424.1 | Symbols: TCL2 | Homeodomain-like superfamily protein
| chr2:12964506-12965468 REVERSE LENGTH=303
Length=303
Score = 248 bits (134), Expect = 2e-65
Identities = 225/268 (84%), Gaps = 10/268 (4%)
Strand=Plus/Plus
Query 26 ATGGATAATACCAACCGTCTTCGTCGCGGTCGCAGTTTTAGGCAAACCAAGTTCACTAGA 85
|||||||| |||||||||||||||| | ||||||| || |||| |||||||||||
Sbjct 1 ATGGATAACACCAACCGTCTTCGTCACCTTCGCAGTCGTAAGCAATCCAAGTTCACT--C 58
Query 86 TCGCGACATGACTCCGAAGAAGTGAGTAGCATCG-AATGGGAGTTTATCAGTATGACCGA 144
| | | || | ||| ||| || | ||| | | ||||||||||||||| |||||| ||
Sbjct 59 TAG-GGGAT-A--CCGCAGAGGTAAATAGTGT-GAAATGGGAGTTTATCAATATGACGGA 113
Query 145 ACAAGAGGAAGATCTCATCTCTCGAATGCACAGACTTGTCGGTGATAGGTGGGATTTAAT 204
|||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 114 ACAAGAAGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGATTTAAT 173
Query 205 AGCAGGAAGAGTGGTCGGACGAAAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAA 264
||||||||||||||| |||||| ||||||| || || || |||| |||||||||||||||
Sbjct 174 AGCAGGAAGAGTGGTAGGACGAGAGGCAAAGGACATAGAAAGATATTGGATTATGAGAAA 233
Query 265 CTCTGA-CTTTTTCTCCCACAAACGACG 291
|| ||| | || | ||||||||||||||
Sbjct 234 CTGTGATCATTGT-TCCCACAAACGACG 260
> AT5G53200.1 | Symbols: TRY | Homeodomain-like superfamily protein
| chr5:21582774-21584145 FORWARD LENGTH=645
Length=645
Score = 195 bits (105), Expect = 3e-49
Identities = 153/176 (87%), Gaps = 4/176 (2%)
Strand=Plus/Plus
Query 92 CATGACTCCGAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAG 151
|||||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct 191 CATGACTCTGAAGAAGTGAGCAGTATCGAATGGGAGTTTATCAACATGACTGAACAAGAA 250
Query 152 GAAGATCTCATCTCTCGAATGCACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGA 211
||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 251 GAAGATCTCATCTTTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTGATAGCAGGA 310
Query 212 AGAGTGG-TCGGACGA-AAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAAC 265
||||| | ||| || || || | ||||| ||||||| |||||| |||||||||
Sbjct 311 AGAGTTCCT-GGAAGACAAC-CAGAGGAGATAGAGAGATATTGGATAATGAGAAAC 364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16437553923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5