BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933543
Length=348
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30424.1 | Symbols: TCL2 | Homeodomain-like superfamily prot... 446 8e-125
AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily prot... 248 2e-65
AT5G53200.1 | Symbols: TRY | Homeodomain-like superfamily prote... 183 7e-46
> AT2G30424.1 | Symbols: TCL2 | Homeodomain-like superfamily protein
| chr2:12964506-12965468 REVERSE LENGTH=303
Length=303
Score = 446 bits (241), Expect = 8e-125
Identities = 286/307 (93%), Gaps = 5/307 (2%)
Strand=Plus/Plus
Query 23 ATGGATAACACCAACCGTCTTCGTCTCCTTCGCAGTCCTAAGCAAACCAAGTTCACTCTA 82
||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||
Sbjct 1 ATGGATAACACCAACCGTCTTCGTCACCTTCGCAGTCGTAAGCAATCCAAGTTCACTCTA 60
Query 83 CGTGACT-CCGAAGAGGTAAGTAGTGTGAAATGGGAGTTTACCAATATGACGGAACAAGA 141
| || | ||| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GGGGA-TACCGCAGAGGTAAATAGTGTGAAATGGGAGTTTATCAATATGACGGAACAAGA 119
Query 142 AGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGATTTAATAGCAGG 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGATTTAATAGCAGG 179
Query 202 AAGAGTGGTAGGACGAGAGGCAAAAGACATAGAGAGATACTGGATTATGAGAAACTGTGA 261
|||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 180 AAGAGTGGTAGGACGAGAGGCAAAGGACATAGAAAGATATTGGATTATGAGAAACTGTGA 239
Query 262 CCATTGTTCCAACAAACGACGCCGCCGATTCCACAAACTTTCCCGTTTCTCTATTTCTCC 321
||||||||| ||||||||||||| | | ||||||| ||| ||||||||||||||||||
Sbjct 240 TCATTGTTCCCACAAACGACGCCGA-G-T-CCACAAATTTTACCGTTTCTCTATTTCTCC 296
Query 322 TCCTTAA 328
|||||||
Sbjct 297 TCCTTAA 303
> AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily protein
| chr2:12960827-12962162 REVERSE LENGTH=696
Length=696
Score = 248 bits (134), Expect = 2e-65
Identities = 230/274 (84%), Gaps = 16/274 (6%)
Strand=Plus/Plus
Query 23 ATGGATAACACCAACCGTCTTCG---TC-TC-C-TTCGCAGTCCTAAGCAAACCAAGTTC 76
|||||||| |||||||||||||| || || | || ||||| || |||||| ||||||
Sbjct 248 ATGGATAATACCAACCGTCTTCGTCTTCGTCGCGGTCCCAGTCTTAGGCAAACTAAGTTC 307
Query 77 ACTC--T-ACG---TGACTCCGAAGAGGTAAGTAGTGT-GAAATGGGAGTTTACCAATAT 129
|||| | || |||||| ||||| || ||||| | | |||||||||||| || |||
Sbjct 308 ACTCGATCCCGATATGACTCTGAAGAAGTGAGTAGCATCG-AATGGGAGTTTATCAGTAT 366
Query 130 GACGGAACAAGAAGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGA 189
||| |||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||
Sbjct 367 GACCGAACAAGAAGAAGATCTCATCTCTCGAATGTACAGACTTGTCGGTAATAGGTGGGA 426
Query 190 TTTAATAGCAGGAAGAGTGGTAGGACGAGAGGCAAAAGACATAGAGAGATACTGGATTAT 249
|||||||||||||||||| |||||| || ||||||| || || |||||||||||||||||
Sbjct 427 TTTAATAGCAGGAAGAGTCGTAGGAAGAAAGGCAAATGAGATTGAGAGATACTGGATTAT 486
Query 250 GAGAAACTGTGACCATTGTTC-CAACAAACGACG 282
|||||||| |||| ||| ||| || |||||||||
Sbjct 487 GAGAAACTCTGACTATTTTTCTCA-CAAACGACG 519
> AT5G53200.1 | Symbols: TRY | Homeodomain-like superfamily protein
| chr5:21582774-21584145 FORWARD LENGTH=645
Length=645
Score = 183 bits (99), Expect = 7e-46
Identities = 176/213 (83%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 52 TCGCAGTCCTAAGCAAAC-CAAGTTCACTCTACGTGACTCCGAAGAGGTAAGTAGTGT-G 109
|||| ||| ||||| ||| ||| || | || | |||||| ||||| || || ||| | |
Sbjct 160 TCGCCGTCGTAAGC-AACACAAAATCGCCCTCCATGACTCTGAAGAAGTGAGCAGTATCG 218
Query 110 AAATGGGAGTTTACCAATATGACGGAACAAGAAGAAGATCTCATCTTTCGAATGCACAGA 169
|||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||
Sbjct 219 -AATGGGAGTTTATCAACATGACTGAACAAGAAGAAGATCTCATCTTTCGAATGTACAGA 277
Query 170 CTTGTTGGTGATAGGTGGGATTTAATAGCAGGAAGAGTGG-TAGGACGAGAGGCAAAAGA 228
||||| ||||||||||||||||| |||||||||||||| | ||| || | || | ||
Sbjct 278 CTTGTCGGTGATAGGTGGGATTTGATAGCAGGAAGAGTTCCT-GGAAGACAACCAGAGGA 336
Query 229 CATAGAGAGATACTGGATTATGAGAAACTGTGA 261
||||||||||| ||||| ||||||||| ||||
Sbjct 337 GATAGAGAGATATTGGATAATGAGAAACAGTGA 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16286750676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5