BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933547
Length=2437
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30470.1 | Symbols: HSI2, VAL1 | high-level expression of su... 3775 0.0
> AT2G30470.1 | Symbols: HSI2, VAL1 | high-level expression of
sugar-inducible gene 2 | chr2:12980507-12985043 REVERSE LENGTH=3089
Length=3089
Score = 3775 bits (2044), Expect = 0.0
Identities = 2304/2426 (95%), Gaps = 32/2426 (1%)
Strand=Plus/Plus
Query 11 TGG-GTTTGTGATGTTTGAAGTCAAAATGGTGTCAAAGATGTGCATGAACGCTTCATGTG 69
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 309 TGGAGTTTGTGATGTTTGAAGTCAAAATGGGGTCAAAGATGTGCATGAACGCTTCATGTG 368
Query 70 GTACGACTTCTACTGTTGAATGGAAGAAAGGTTGGCCTCTTCGATCTGGTCTTCTCGCTG 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GTACGACTTCTACTGTTGAATGGAAGAAAGGTTGGCCTCTTCGATCTGGTCTTCTCGCTG 428
Query 130 ATCTCTGTTATCGTTGCGGATCTGCGTATGAGAGTTCTCTTTTCTGTGAACAATTCCATA 189
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 429 ATCTCTGTTATCGTTGCGGATCTGCGTATGAGAGTTCTCTATTCTGTGAACAATTTCATA 488
Query 190 AGGACCAATCTGGTTGGAGGGAATGCTATTTGTGTAACAAGAGACTACATTGCGGATGCA 249
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 489 AGGACCAATCTGGTTGGAGGGAATGCTATTTGTGTAGCAAGAGACTACATTGTGGATGCA 548
Query 250 TTGCTTCTAAGGTAACGATTGAGCTT-ATGGACTATGGTGGTGTTGGTTGTAGTACTTGT 308
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 549 TTGCTTCTAAGGTAACGATTGAG-TTAATGGACTATGGTGGTGTTGGTTGTAGTACATGT 607
Query 309 ACTTGCTGCCATCAACTCAATTTGAACACGAGGGGTGAGAATCCAGGTGTTTTTAGCAGA 368
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 608 GCTTGCTGCCATCAACTCAATTTGAACACAAGGGGTGAGAATCCAGGTGTTTTTAGCAGA 667
Query 369 TTGCCAATG-AAACTGTTAGCTGATAGACAACATGTAAATGGCGAAAGCGGAATGAATAT 427
||||||||| |||| |||||||||||| |||||||||||| | || ||| |
Sbjct 668 TTGCCAATGAAAAC-GTTAGCTGATAGGCAACATGTAAAT---G---GC-----GAA-A- 713
Query 428 TGACGGAGGAAGAAACGAAGCCGGTCTCTTTTCTCAGCCACTAGTCATGGGCGGCGATAA 487
| ||||||||||||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 714 -G-CGGAGGAAGAAACGAAGGCGATCTCTTTTCTCAGCCACTAGTCATGGGCGGAGATAA 771
Query 488 AAGGGAAGAGTTCATGCCTCACCGCGGGCTTGGTCAGCTAATGAATTCAGAAAACACCAC 547
|||||||||||||||||||||||| ||| ||||| ||||||||| | |||||| || ||
Sbjct 772 AAGGGAAGAGTTCATGCCTCACCGTGGGTTTGGTAAGCTAATGAGTCCAGAAAGTACAAC 831
Query 548 CACCGGGTATAGGCTGGATGCTGCTGGGGAAATACATGAATCATCACCTTCACAGCCATC 607
||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 832 CACCGGGCATAGGCTGGATGCTGCTGGGGAAATGCATGAATCATCACCTTTACAGCCATC 891
Query 608 TTTGAATATGGGTTTGGCTGTAAATCCTTTTAGCCCATCTTTTGCAACCGAGGGTGTCGA 667
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 892 TTTAAATATGGGTTTGGCTGTGAATCCGTTTAGCCCATCTTTTGCAACCGAGGCTGTCGA 951
Query 668 GGGAAAGAAACACATCAGTGCTTCTCAGTCCAACATGGTCCATTGCTCTGCCTCTAATAT 727
||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 952 GGGAATGAAACACATCAGTCCTTCTCAGTCCAACATGGTCCATTGCTCTGCTTCTAATAT 1011
Query 728 ACTGCAAAAGCCATCAAAACCTGCTATTTCAACTCCTCCTGTGGCTAGTAAATCCGCTCA 787
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 ACTGCAAAAGCCATCAAGACCTGCTATTTCAACTCCTCCTGTGGCTAGTAAATCCGCTCA 1071
Query 788 GGCGCGGATTGGAAGGCCTCCTGTCGAAGGGCGAGGGAAAGGCCACTTACTTCCGCGGTA 847
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1072 GGCGCGGATTGGAAGGCCTCCTGTCGAAGGGCGAGGGAGAGGCCACTTGCTTCCGCGGTA 1131
Query 848 TTGGCCAAAATATACGGATAAAGAGGTTCAGCAGATCTCTGGAAATTTGAATCTGAACAT 907
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1132 TTGGCCAAAATATACGGATAAAGAGGTTCAGCAGATCTCTGGAAATTTGAATTTGAACAT 1191
Query 908 TGTACCTCTCTTTGAGAAAACTCTTAGTGCCAGTGATGCTGGTCGCATTGGTCGTCTAGT 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TGTACCTCTCTTTGAGAAAACTCTTAGTGCCAGTGATGCTGGTCGCATTGGTCGTCTAGT 1251
Query 968 TCTTCCAAAAGCCTGTGCAGAGGCATATTTTCCTCCGATTAGTCAATCGGAGGGCATTCC 1027
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1252 TCTTCCAAAAGCCTGTGCAGAGGCATATTTTCCTCCGATTAGTCAATCCGAAGGCATTCC 1311
Query 1028 TCTGAAAATCCAAGATGTGAGGGGTAAGGAGTGGACGTTCCAGTTCAGATATTGGCCCAA 1087
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1312 TTTGAAAATCCAAGATGTGAGGGGTAGGGAGTGGACGTTCCAGTTCAGATATTGGCCCAA 1371
Query 1088 TAACAACAGTAGAATGTATGTTTTAGAAGGTGTCACTCCATGCATACAGTCCATGATGCT 1147
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TAACAATAGTAGAATGTATGTTTTAGAAGGTGTCACTCCATGCATACAGTCCATGATGCT 1431
Query 1148 ACAGGCTGGTGATACAGTAACTTTCAGTCGGGTTGATCCTGGTGGAAAACTAATCATGGG 1207
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1432 ACAGGCTGGTGATACAGTAACTTTCAGTCGGGTTGATCCTGGCGGAAAACTAATCATGGG 1491
Query 1208 TTCTAGAAAGGCAGCTAATGCTGGAGACATGCAGGGTTGTGGTCTCACCAATGGAACTTC 1267
||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 1492 TTCCAGGAAGGCAGCTAATGCTGGAGACATGCAGGGTTGTGGGCTCACCAACGGAACATC 1551
Query 1268 AACCGAGGACACATCATCGTCTGGTGTTACAGAAAACCCACCCTCCATAAATGGTTCATC 1327
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1552 AACTGAGGACACATCATCGTCTGGTGTAACAGAAAACCCACCCTCCATAAATGGTTCCTC 1611
Query 1328 GTGTCCCTCACTAATACCGCAAGAATTGAACGGTATGCCTGAAAATTTGAGCTCACAGAA 1387
|||| |||||||||||| |||| ||||| ||||||||||| ||||||| ||
Sbjct 1612 GTGTATTTCACTAATACCGAAAGAGTTGAATGGTATGCCTGAGAATTTGA----AC---- 1663
Query 1388 GAGTGAGACTAACGGGGGCAGGATAGGTGATGATCCTACACGAGTTAAAGAGAAGAAGAG 1447
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 -AGTGAGACTAACGGGGGCAGGATAGGTGATGATCCTACACGAGTTAAAGAGAAGAAGAG 1722
Query 1448 AACTCGAACCATTGGGGCAAAAAATAAGAGACTTCTTTTGCATAGTGAAGAATCTATGGA 1507
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 AACTCGAACCATTGGTGCAAAAAATAAGAGACTTCTTTTGCATAGTGAAGAATCTATGGA 1782
Query 1508 GCTGAGACTCACCTGGGAAGAAGCTCAGGACTTGCTTCGTCCCTCTCCTAGTGCAAAGCC 1567
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1783 GCTGAGACTCACTTGGGAAGAAGCTCAGGACTTGCTTCGTCCCTCTCCTAGTGTAAAGCC 1842
Query 1568 TACCATCGTCGTCATTGAGGAGAAAGAAATTGAAGAATATGACGAACCTCCTGTCTTTGG 1627
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1843 TACCATCGTTGTCATTGAGGAGCAAGAAATTGAAGAATATGACGAACCTCCTGTCTTTGG 1902
Query 1628 AAAGAGGACTATAGTCACTACAAGACCTTCAGGTGAACAGGAACGCTGGGCAACTTGCGA 1687
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1903 AAAGAGGACTATAGTCACTACAAAACCTTCAGGTGAACAGGAACGATGGGCAACTTGCGA 1962
Query 1688 CGACTGCTCTAAATGGAGAAGGTTACCTGTAGACGCTCTTCTTCCCTTTAAATGGACATG 1747
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1963 CGACTGCTCTAAATGGAGAAGGTTACCTGTAGATGCTCTTCTTTCCTTTAAATGGACATG 2022
Query 1748 TATAGACAATGTTTGGGACGTGAGCAGGTGTTCATGTTCTGCACCGGAGGAGAGTCTGAA 1807
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2023 TATAGACAATGTTTGGGATGTGAGTAGGTGTTCATGTTCTGCACCGGAGGAGAGTCTGAA 2082
Query 1808 GGAACTTGAGAATGTTCTTAAAGTAGGAAGAGAGTACAAGAAGAGAAGAACTGGGGAAAG 1867
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2083 GGAACTTGAGAATGTTCTTAAAGTAGGAAGAGAGCACAAGAAGAGAAGAACTGGGGAAAG 2142
Query 1868 CCAGGCAGCAAAAAGTCAGCAAGAACCGTGTGGTTTGGATGCACTGGCGAGTGCAGCAGT 1927
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2143 CCAGGCAGCAAAAAGTCAGCAAGAACCGTGTGGTTTGGACGCACTGGCGAGTGCAGCAGT 2202
Query 1928 CTTAGGAGACACAATAGGCGAGCCAGAGGTTGCCACCACGACCAGACATCCAAGGCACAG 1987
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2203 CTTAGGAGACACAATAGGCGAGCCAGAGGTAGCGACCACGACCAGACATCCAAGGCACAG 2262
Query 1988 GGCTGGATGCTCTTGCATCGTGTGCATTCAGCCACCAAGTGGGAAAGGTAGACACAAGCC 2047
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2263 GGCTGGATGCTCTTGCATCGTGTGCATTCAGCCACCAAGTGGGAAAGGTAGGCACAAGCC 2322
Query 2048 TACATGTGGGTGCACTGTGTGTAGCACCGTGAAGAGAAGGTTCAAAACGCTTATGATGAG 2107
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2323 TACATGTGGCTGCACTGTGTGTAGCACCGTGAAGAGAAGGTTCAAGACGCTTATGATGAG 2382
Query 2108 GAGGAAGAAGAAGCAGTTGGAGCGCGATGTAACAGCAGCAGAAGATAAGAAGAAGAAGGA 2167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2383 GAGGAAGAAGAAGCAGTTGGAGCGCGATGTAACAGCAGCAGAAGATAAGAAGAAGAAGGA 2442
Query 2168 CATGGAACTGGCTGAGTCTGATAAGAGTAAGGAGGAGAAGGATGTGAACACAGCGAGGAT 2227
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2443 CATGGAACTGGCTGAGTCTGATAAGAGTAAGGAGGAGAAGGAAGTGAACACAGCGAGAAT 2502
Query 2228 AGATCTGAACAGTGATCCATACAACAAAGAAGATGCTGAAGCTGTGGCGGTGGAGAAAGA 2287
||| |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct 2503 AGACCTGAACAGTGATCCATACAATAAAGAAGATGTTGAAGCTGTTGCGGTGGAGAAAGA 2562
Query 2288 AGAGAGTCGAAAAAGAGCAATTGGACAGTGTTCAGGG-GTGGTGACTCAAGGCGCCGGTG 2346
||||||||||||||||||||| ||||||||||| ||| |||||| |||||| |||| |||
Sbjct 2563 AGAGAGTCGAAAAAGAGCAATAGGACAGTGTTC-GGGCGTGGTGGCTCAAGACGCCAGTG 2621
Query 2347 ATGTATTAGGCGTTACGGAGTTAGAAGGAGAGGCTAAGAAAGTTGGTGAAGAGCCGAGAG 2406
|||| ||||| ||||| |||||||||||||||| |||||| ||| |||||||||||||||
Sbjct 2622 ATGTTTTAGGAGTTACAGAGTTAGAAGGAGAGGGTAAGAATGTTCGTGAAGAGCCGAGAG 2681
Query 2407 TTTCAAGCTAATATGGAAGGAGAAAA 2432
||||||||| ||||||||||| ||||
Sbjct 2682 TTTCAAGCTGATATGGAAGGA-AAAA 2706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121033513995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5