BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933554
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30530.1 | Symbols: | unknown protein; LOCATED IN: cellular... 1842 0.0
> AT2G30530.1 | Symbols: | unknown protein; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G01970.1); Has 5513
Blast hits to 872 proteins in 154 species: Archae - 0; Bacteria
- 30; Metazoa - 615; Fungi - 144; Plants - 149; Viruses
- 12; Other Eukaryotes - 4563 (source: NCBI BLink). | chr2:13008916-13011063
FORWARD LENGTH=1467
Length=1467
Score = 1842 bits (997), Expect = 0.0
Identities = 1114/1168 (95%), Gaps = 17/1168 (1%)
Strand=Plus/Plus
Query 1 AGCATGAGCGTCAGAAGTTGATGAAGAAAGTCGACGAAATTGAGGATTTCAGATTCGAAG 60
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 136 AGCATGAGCGTCAGAAGTTGATGAACAAAGTCGACGAAATCGAGGATTTCAGATTCGAGG 195
Query 61 ATCTCGAAATGGAGACGGAGAAAGATAAGGAAAGGATGATGCCGGCGACGACGAGGACGA 120
||||||||||||||||||||||||||||||||||||||||| | || |||| |||||
Sbjct 196 ATCTCGAAATGGAGACGGAGAAAGATAAGGAAAGGATGATGAC-GC--CGAC---GACGA 249
Query 121 CGAGGATGTCTTATACATCTTCGTCGTCTCCGTCTCCATCTTCGGCTTCATCATCTGCTG 180
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 -GA--ATGTCTTATTCATCTTCGTCGTCTCCGTCTCCATCTTCGGCTTCATCATCTGCTG 306
Query 181 CGTCGTCTCTCGCTGCGAAGGCGATTCGAGCATCTTCTGCGCATAGAGACTCTTCTCTTT 240
|||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 307 CGTCCTCTCTCGCTGCCAAGGCAATTCGAGCATCTTCTGCGCATAGAGACTCTTCTCTTT 366
Query 241 CTTCTGCTTACTCGTCTCCTTCTTCTGCTCCTGTTCCCACTCCTCCCAAGGAGGTGAATA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CTTCTGCTTACTCGTCTCCTTCTTCTGCTCCTGTTCCCACTCCTCCCAAGGAGGTGAATA 426
Query 301 AGGCTCATGAGTATACTTCTATGAAGAGTTTGAATGAACCAAAACGAGGCTTTTGGGGGA 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 427 AGGCTTATGAGTATACTTCTATGAAGAGTTTGAATGAACCAAAACGAGGCTTTTGGGGAA 486
Query 361 GTTTAGCTAGTAAAGCTAAGGCTTTTTTGGATGAGGATGATCCTAATCAGTTGCCTCAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GTTTAGCTAGTAAAGCTAAGGCTTTTTTGGATGAGGATGATCCTAATCAGTTGCCTCAAA 546
Query 421 GTCCTAAGAGAACGGAGCAGAACATACCTTCTCCAACGACTTCAGGAACTAAGGAGGCCG 480
|||||||||||| |||||||| |||||||||| | || ||||||||||||||||| || |
Sbjct 547 GTCCTAAGAGAATGGAGCAGAGCATACCTTCTGCGACAACTTCAGGAACTAAGGAAGCTG 606
Query 481 GTCAGACTGGTAGGAAAAGCGAGAATCCTTCATTACAGAAG-AGGTTAGACGCCATCACT 539
|||||||||||||||||||||||||||||||||||||| || || ||||| || ||||||
Sbjct 607 GTCAGACTGGTAGGAAAAGCGAGAATCCTTCATTACAG-AGAAGATTAGATGCGATCACT 665
Query 540 TCATCGTTGAATTACATTGGTGGCACCATTGGTACTGTTGTTGAGGAGGGTATTACTGCT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 666 TCATCGTTGAATTACATTGGTGGCACCATTGGTACTGTTGTTGAGGAGGGTATTACAGCT 725
Query 600 GTGGAGAACCGTACTGCAGGAATCATTCAAGAAACCCGTAAAAAGATTaaaaaaaaGCCA 659
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 726 GTGGAGAATCGTACTGCAGGCATCATTCAAGAAACCCGTAAAAAGATTAAAAAAAAGCCA 785
Query 660 AGTCTTACAAGGAACCAGCAGAATCCTGAGATACAAGCAGATTTGGAAATTCAACTCAAG 719
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 786 AGTCTTACAAGGAACCAGCAGAATCCTGAGATACAAGCTGATTTGGAGATTCAACTAAAG 845
Query 720 GCATCTCGCGACGTTGCAATGGCCATGGCTGCCAAGGCGAAA-CTCTTACTTCGGGAGCT 778
|||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 846 GCATCTCGCGACGTTGCAATGGCCATGGCTGCCAAGGC-AAAGCTTTTACTTCGGGAGCT 904
Query 779 GAAGATGGTGAAA-TCTGATCTGGCTTTTGCAAAGCAACGATGCGCACAGCTGGAAGAAG 837
||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 905 GAAGATGGT-AAAGTCTGATCTGGCTTTTGCGAAGCAACGATGCGCACAGCTGGAAGAAG 963
Query 838 AAAATAAGGTTCTGAGGGAGAACCGTAGTGGCGACAGTCAGACAGATGACGATGATCTGG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 AAAATAAGGTTCTGAGGGAGAACCGTAGTGGCGACAGTCAGACAGATGACGATGATCTGG 1023
Query 898 TGCGACTTCAACTGGAAACATTATTAGCTGAGAAAGCTCGGTTGGCTCATGAAAACTCGA 957
|||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 1024 TGCGACTTCAACTGGAAACACTGTTAGCTGAGAAAGCACGGTTGGCTCATGAAAACTCGA 1083
Query 958 TATACACTCGCGAAAACCTCTATCTGAGAGGAGTCGTCGAATATCACCAGCTCACAATGC 1017
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1084 TATACACCCGCGAAAACCTCTATCTGAGAGGAGTCGTCGAATATCACCAGCTAACAATGC 1143
Query 1018 AAGATGTGGTCTACTTTGATGAGAAGACTGAAGAAGTAACTGAGGTATATCCCATTAATG 1077
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1144 AAGATGTGGTCTACTTTGATGAGAAGACTGAAGAAGTAACGGAGGTATATCCCATTAATG 1203
Query 1078 TGTCTTCAATGTCTTCTTCATCAGATAACTCTCACAATCCAAATCCAAGTTTCTTGGAGC 1137
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1204 TGTCTTCAATGTCTTCTTCATCAGATAACTCTTACAATCCAAATCCAAGTTTCTTGGAGC 1263
Query 1138 TCAAATGAAACAC-ATCAACTACTCTCA 1164
||||||||||||| | |||| ||| |||
Sbjct 1264 TCAAATGAAACACCA-CAACAACTATCA 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57379222935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5