BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933555

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30540.1 | Symbols:  | Thioredoxin superfamily protein | chr...   551    2e-156


> AT2G30540.1 | Symbols:  | Thioredoxin superfamily protein | chr2:13011105-13011784 
REVERSE LENGTH=680
Length=680

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 332/349 (95%), Gaps = 0/349 (0%)
 Strand=Plus/Plus

Query  1    GAGACTTCCTTCAAGAAACCATGGACAAAGTTGTGAGAATGTCGTCAGACAAAGGAGTGG  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  198  GAGACCTCCTTCAAGAAACCATGGACAAAGTTGTGAGAATGTCGTCAGAGAAAGGAGTGG  257

Query  61   TTATTTTCAGCAAGAGCTCGTGTTGCCTGTCCTATGCGGTCCAAGTCCTCTTCCAAGACC  120
            |||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct  258  TTATTTTCAGCAAGAGCTCGTGTTGCATGTCCTATGCGGTCCAAGTACTTTTCCAAGACC  317

Query  121  TCGGGGTTCACCCAACAGTCCATGAGATCGATAAAGACCCTGAATGTCGTGAGATCGAGA  180
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  318  TTGGGGTTCACCCAACAGTCCATGAGATCGATAAAGACCCTGAATGTCGTGAGATCGAGA  377

Query  181  AAGCTCTAATGAGGCTCGGGTGTTCCACGCCGGTCCCAGCTATCTTTGTGGGTGGGGAGC  240
            |||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct  378  AAGCCCTAATGAGGTTAGGGTGTTCCACGCCGGTCCCAGCCATCTTTGTGGGTGGGAAGC  437

Query  241  TCATTGGTTCGACCAATGAAGTCATGTCGCTGCACCTAAGCGGCTCGTTGGTTCCGCTGG  300
            ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |
Sbjct  438  TCATTGGTTCGACCAATGAAGTCATGTCGCTTCACTTAAGCGGCTCGCTGGTTCCGCTAG  497

Query  301  TTAAGCCGTTTCAGGCCAATCTATGTTAAAAAGGTGTTCTAACTTTCTA  349
            ||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct  498  TTAAGCCGTTTCAAGCCAATCTATGTTAAAAAGGTGTTCTAATTTTCTA  546



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16337018425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5