BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933558

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30570.1 | Symbols: PSBW | photosystem II reaction center W ...   778    0.0  


> AT2G30570.1 | Symbols: PSBW | photosystem II reaction center 
W | chr2:13019028-13020194 REVERSE LENGTH=841
Length=841

 Score =  778 bits (421),  Expect = 0.0
 Identities = 441/451 (98%), Gaps = 0/451 (0%)
 Strand=Plus/Plus

Query  2    AAATCAATTGAAGAGTCTCTCAGTCGTTAGGGGAAGCAAATAGAGAAATGGCTAGCTTTA  61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  95   AAATCAATTGAAGAGTCTCTCAGTCGTTAGGGGAAGCAAATAGAGAAATGGCTAGCTTTA  154

Query  62   CTGCCTCCGCTTCCACCGTCTCCGCCGCTCGTCCGGCTCTCCTTCTCAAGCCTACCGTCG  121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  155  CTGCCTCCGCTTCCACCGTCTCCGCCGCTCGTCCGGCTCTCCTTCTCAAGCCTACCGTCG  214

Query  122  CCGTCTCCGCTCCTGTTCTTGGTTTGCCTCCAATGGGTAAGAAGAAGGGAGGAGTGAGAT  181
            || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  215  CCATCTCTGCTCCTGTTCTTGGTTTGCCTCCAATGGGTAAGAAGAAGGGAGGAGTGAGAT  274

Query  182  GCTCAATGGAGACAAAGCAAGGAAACGTCTCAGTCATGGGGGCTGGAGTTTCAGCGGCTG  241
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct  275  GTTCAATGGAGACAAAGCAAGGAAACGTCTCAGTCATGGGGGCTGGAGTTTCAGCTGCAG  334

Query  242  CAACAGCTGCTTTGACAGCGGTGATGAGCAATCCCGCGATGGCTTTGGTTGATGAGAGGA  301
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  335  CAACAGCTGCTTTGACGGCGGTGATGAGCAATCCCGCGATGGCTTTGGTTGATGAGAGGA  394

Query  302  TGTCGACAGAAGGAACAGGATTACCTTTTGGCCTAAGCAACAACCTCTTGGGTTGGATTC  361
            |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  395  TGTCAACAGAAGGAACAGGATTACCCTTTGGTCTAAGCAACAACCTCTTGGGTTGGATTC  454

Query  362  TGTTTGGAGTCTTCGGTTTGATCTGGACTTTCTTCTTCGTCTACACTTCATCTCTCGAGG  421
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  455  TGTTTGGAGTCTTTGGTTTGATCTGGACTTTCTTCTTCGTCTACACTTCATCTCTCGAGG  514

Query  422  AGGATGAAGAATCTGGTCTTTCACTCTGAAG  452
            |||||||||||||||||||||||||||||||
Sbjct  515  AGGATGAAGAATCTGGTCTTTCACTCTGAAG  545



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22354195415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5