BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933559
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30575.1 | Symbols: GAUT5, LGT5 | los glycosyltransferase 5 ... 2948 0.0
> AT2G30575.1 | Symbols: GAUT5, LGT5 | los glycosyltransferase
5 | chr2:13020397-13024208 REVERSE LENGTH=2302
Length=2302
Score = 2948 bits (1596), Expect = 0.0
Identities = 1791/1884 (95%), Gaps = 17/1884 (1%)
Strand=Plus/Plus
Query 1 CTCTGAGAAGTGACGCACATTGATGAATCAAGTTCGTCGTTGGCAGAGGATTTTGATCCT 60
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 281 CTCTGAGAAGTTACGCACATTGATGAATCAAGTTCGTCGTTGGCAGAGGATTCTGATCCT 340
Query 61 CTCGCTGCTATTGTTATCTGTGTTAGCTCCGATTGTTTTCGTTTCGAATCGGCTCAAGAG 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 341 CTCGCTGCTATTGTTATCTGTTTTAGCTCCGATTGTTTTCGTTTCGAATCGGCTCAAGAG 400
Query 121 TATTACTTCCGTCGATAGAGGAGAATTCATTGAAGAATTATCAGACATTACATATAAGAC 180
|| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 401 CATCACTTCCGTCGATAGAGGAGAATTCATTGAAGAATTATCCGACATTACAGATAAGAC 460
Query 181 C---GATGACCTTAGACTTACTGCTATTGAACAGGACGAAGAAGGCTTGAAGGAGCCTAA 237
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 CGAGGATGAACTTAGACTTACTGCTATTGAACAGGACGAAGAAGGCTTGAAGGAGCCTAA 520
Query 238 ACGCATTCTGCAGGATCGAGATTTTAATTCTGTGGTTTCATCAAATTCCTCTGATAAAAG 297
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 521 ACGTATTCTGCAGGATCGAGATTTTAATTCTGTGGTTTTGTCAAATTCCTCTGATAAAAG 580
Query 298 TAATGATACTGTGCAGTCTAATGAGGGAGA-CAAAACAACCTTTCTCTCAGAAATTTATG 356
|||||||||||||||||||||||||||||| ||||| || ||||||||||||| || ||
Sbjct 581 TAATGATACTGTGCAGTCTAATGAGGGAGACCAAAA-AAACTTTCTCTCAGAAGTTGATA 639
Query 357 GGGGAAATAATCACAAACCAAAGGAGGAAGAAGCTGTAGTTTCACAGAAAACCACAGTAA 416
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 640 AGGGAAATAATCACAAACCAAAGGAGGAACAAGC---AGTTTCACAGAAAACCACAGTAA 696
Query 417 GCTCGAATGCGGAGGTTAATCTTTCATCAAGAGATATTCAACTTAATCATAAAACGGAAT 476
|||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 697 GCTCGAATGCGGAGGTGAAAATTTCAGCAAGAGATATTCAACTTAATCATAAAACGGAAT 756
Query 477 TCCGACCCCCTTCAGGTAAGAGTGAAAAGAATACAAGGGTTCAGCTTGAAAGAGCAACAG 536
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 757 TCCGACCCCCTTCAAGTAAGAGTGAAAAGAATACAAGGGTTCAACTTGAAAGAGCAACAG 816
Query 537 ATGAGAGGATAAAGGAGATCAGAGACAAAATTATCCAAGCGAAAGCCTATCTGAACTTGG 596
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 817 ATGAGAGGGTAAAGGAGATCAGAGACAAAATTATCCAAGCGAAAGCCTATCTGAATTTGG 876
Query 597 CCCTACCTGGGAATAACTCCCAAATCGTAAAGGAATTGAGAGTTCGAACGAAAAAGCTGG 656
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 877 CCCTACCTGGGAATAACTCCCAAATCGTAAAGGAGTTGAGAGTTCGAACGAAAGAGCTGG 936
Query 657 AACGAGCTGTC-GGTGATGCTACTACGGATAAATATTTGCCAAAGAGCACTCCTAACAGA 715
|||| ||| | |||||| |||| | |||||||||||||||||||||| |||||||||||
Sbjct 937 AACGGGCT-ACTGGTGATACTACCAAGGATAAATATTTGCCAAAGAGCTCTCCTAACAGA 995
Query 716 TTGAAGGCCATAGAAGTTGCGTTATACAAGGTCAGTCGTGCCTTTCACAACTGCCCTGCC 775
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 996 TTGAAGGCCATGGAAGTTGCGTTATACAAGGTCAGCCGTGCCTTTCACAACTGCCCTGCC 1055
Query 776 ATTGCTACCAAACTCCAAGTCATGACTTATAAAACCGAAGAACAAGCTCGGGCGCAGAAG 835
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 ATTGCTACCAAACTCCAAGCCATGACTTATAAAACCGAAGAACAAGCTCGGGCGCAGAAG 1115
Query 836 AAGCAAGCAGCATATTTAATGCAGCTTGCAGCAAGGACTACCCCAAAAGGGCTTCATTGT 895
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 AAACAAGCAGCATATTTAATGCAGCTTGCAGCAAGGACTACCCCAAAAGGGCTTCATTGT 1175
Query 896 CTCTCAATGCGGTTGACAACAGAATACTTTACCCTGGATCACGAAAAAAGGCAGCTTTTG 955
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1176 CTCTCAATGCGGTTGACAACAGAATATTTTACCCTGGATCACGAAAAAAGGCAGCTTTTG 1235
Query 956 CAACAAAATTATAATGATCCTGATCTCTACCATTACGTAGTCTTCTCTGACAATGTTTTG 1015
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 CAACAAAGTTATAATGATCCTGATCTCTACCATTACGTAGTCTTCTCTGACAATGTTTTG 1295
Query 1016 GCCTGTTCGGTTGTTGTTAACTCTACAATCTCCTCATCAAAGGAACCGCAAAAAATAGTA 1075
|||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1296 GCCTCTTCGGTTGTTGTTAACTCTACAATCTCCTCATCAAAGGAACCGGATAAAATAGTA 1355
Query 1076 TTCCATGTGGTGACTGATTCACTCAATTACCCAGCAATCTCAATGTGGTTTTTATTAAAC 1135
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1356 TTCCATGTGGTGACAGATTCACTCAATTACCCAGCAATCTCAATGTGGTTTTTACTAAAC 1415
Query 1136 CCATGTGGCAGAGCTTCAATCCAAATCCTAAACATTGATGATATGAATGTCCTGCCTTTG 1195
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1416 CCAAGTGGCAGAGCTTCAATCCAAATCCTAAACATTGATGAAATGAATGTCCTGCCATTG 1475
Query 1196 GACCATGCTGAATTGCTGATGAAGCAAAATTCAAGTGACCCAAGAATCATTTCAGCGCTC 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 TACCATGCTGAATTGCTGATGAAGCAAAATTCAAGTGACCCAAGAATCATTTCAGCGCTC 1535
Query 1256 AACCATGCACGCTTCTATCTCCCAGATATCTTCCCAGGTCTAAACAAGATCGTACTCTTC 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 AACCATGCACGCTTCTATCTCCCAGATATCTTCCCAGGTCTAAACAAGATCGTACTCTTC 1595
Query 1316 GACCATGATGTAGTAGTTCAAAGAGATCTAAGTAGACTGTGGAGC-TTAAATATGACGGG 1374
|| |||||||||||||| ||||| ||||||| ||||||||||||| || | |||||||||
Sbjct 1596 GATCATGATGTAGTAGTGCAAAGGGATCTAACTAGACTGTGGAGCCTTGA-TATGACGGG 1654
Query 1375 GAAAGTTGTTGGAGCTGTAGAGACGTGTCTTGAAGGTGAACCTTCATATCGTTCGATGGA 1434
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1655 GAAAGTTGTTGGAGCTGTAGAGACTTGTCTTGAAGGTGATCCTTCATATCGTTCGATGGA 1714
Query 1435 CACATTCATTAACTTT-TCAGATGCATGGGTTGCTCAGAAATTTGATCCCAAGGCTTGCA 1493
| |||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1715 CTCATTCATTAA-TTTCTCAGATGCATGGGTTTCTCAGAAATTTGATCCCAAGGCTTGCA 1773
Query 1494 CTTGGGCATTCGGGATGAATCTATTTGATCTCCAAGAATGGAGAAGACAGGAGTTGACTT 1553
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1774 CTTGGGCATTCGGGATGAATCTATTTGATCTCGAAGAATGGAGAAGACAGGAGTTGACTT 1833
Query 1554 CTGTATACCAGAAATACTTCGACCTGGGAGTTAAAAG-ACGTCTGTGGAAAGCAGGGGGC 1612
||||||||| ||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 1834 CTGTATACCTGAAATACTTCGACCTGGGAGT-AAAAGGACATCTGTGGAAAGCAGGGGGA 1892
Query 1613 TTGCCAATAGGTTGGTTGACTTTCTTCGGGAAAACGTTACCATTGGAAAAGAGATTGAAT 1672
|||||| |||||||||||||||| |||||| ||||||| || ||||||||||||| |||
Sbjct 1893 TTGCCAGTAGGTTGGTTGACTTTTTTCGGGCAAACGTTTCCGTTGGAAAAGAGATGGAAC 1952
Query 1673 GTGGGTGGGTTAGGTCACGAATCAGGAGTCAGGGCAAGCGACATTGAACAAGCGGTGGTT 1732
||||||||||||||||||||||||||| |||||||||||||||| |||||||| | ||||
Sbjct 1953 GTGGGTGGGTTAGGTCACGAATCAGGACTCAGGGCAAGCGACATCGAACAAGCAGCGGTT 2012
Query 1733 ATACACTACGACGGGATCATGAAGCCATGGCTAGACATCGGTATAGACAAGTACAAGCGC 1792
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2013 ATACACTACGACGGGATCATGAAACCATGGCTGGACATCGGTATAGACAAGTACAAGCGC 2072
Query 1793 TACTGGAACATACATGTACCTTACCATCACCCTTACTTACAACGCTGCAACATTCACGAT 1852
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 2073 TACTGGAACATACATGTACCTTACCATCACCCTCACTTACAACGGTGCAACATTCACGAT 2132
Query 1853 TGATTTTTT-AAACAAGTTACCAC 1875
||||||||| ||||||||||||||
Sbjct 2133 TGATTTTTTGAAACAAGTTACCAC 2156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92820807705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5