BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933560
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30580.1 | Symbols: DRIP2 | DREB2A-interacting protein 2 | c... 2097 0.0
> AT2G30580.1 | Symbols: DRIP2 | DREB2A-interacting protein 2 |
chr2:13026000-13030661 FORWARD LENGTH=2005
Length=2005
Score = 2097 bits (1135), Expect = 0.0
Identities = 1246/1301 (96%), Gaps = 2/1301 (0%)
Strand=Plus/Plus
Query 1 AAAAGAGTCGTTAAGAGAGCAATGGAAGGAGACATGGTGGCTAAAGTGAAGAGAGAAACG 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AAAGGAGTCGTTAAGAGAGCAATGGAAGGAGACATGGTGGCTAAAGTGAAGAGAGAAACG 483
Query 61 GTGGTGGCATGCATGACTTGCCCTCTCTGTGAGAAACTCCTCCGTGACGCCACTACCATT 120
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 484 GTGGTGGCATGCATGACTTGTCCTCTCTGTGACAAACTCCTCCGTGACGCCACTACCATT 543
Query 121 TCTGAGTGTCTTCACACGTTTTGTAGAAAATGCATATATGAGAAAATCACAGAGGATGAG 180
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 544 TCAGAGTGTCTTCACACGTTTTGTAGGAAATGCATTTATGAGAAAATCACAGAGGATGAG 603
Query 181 ATAGAGTGCTGTCCAGTATGCGATATTGACCTCGGGGGTACCCCACTGGAGAAACTAAGG 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 ATAGAGAGCTGTCCAGTATGCGATATTGACCTCGGGGGTACCCCACTGGAGAAACTAAGG 663
Query 241 CCTGACCACATTTTGCAAGATTTGAGAGCCAAATTATTTCCTCTAAAACG-AAAGAGAGA 299
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || ||
Sbjct 664 CCTGACCACATTTTGCAAGACTTGAGAGCCAAATTATTTCCTCTAAAACGTAAAAAG-GA 722
Query 300 GAGGGCGCCTGAAGTTGTTTCCTCCATCACATTACCTGCAAGGAGGAAGGAAAGGTCTAT 359
||| |||||||||||||| ||||||||| |||||||||||| ||||||||| ||||||||
Sbjct 723 GAGAGCGCCTGAAGTTGTGTCCTCCATCTCATTACCTGCAAAGAGGAAGGAGAGGTCTAT 782
Query 360 CTCGTCTTTGGTGGTAAGCACACCTAGGGTTTCAGCACAAGCTGGTACAACAGGAAAAAG 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 783 CTCGTCTTTGGTGGTAAGCACACCCAGGGTTTCAGCACAAGCTGGTACAACAGGAAAAAG 842
Query 420 AACAAAAGCTGCTACGAGAAAAGATGTACGAGGTAGTGGCTCATTCACTAAGAGAACAGT 479
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 843 AACAAAAGCTGCTACGAGAAAAGATGTAAGAGGTAGTGGTTCATTCACTAAGAGAACAGT 902
Query 480 GAAGAAGGAAGAAGAATTTGGAGATGATCATATAGAGAGCGCAAGCTCGCCTGAAACAGT 539
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 903 GAAGAAGGAAGAAGAATTTGGAGATGATCATGTAGAGAGCGCAAGCTCGCCTGAAACACT 962
Query 540 TAAAAAGTTTACTCAGAATAAAAGGCAGTCTTCATATGCAGAGCCTAACCAGTCCCTCTC 599
|||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct 963 TAAAAAGTTTACTCAGAATAAAAGACAGTCTTCATATGCAAATCCTAACCAGTCCCTCTC 1022
Query 600 TAATCGAAGAAACAAGGATGTTGATGAACCATGGGATTCCAAATTACATCTTTGGAAACC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TAATCGAAGAAACAAGGATGTTGATGAACCATGGGATTCCAAATTACATCTTTGGAAACC 1082
Query 660 TCTAAATTTTCTTGTGGATGTGGCAAACGGAACAAAGGACCCAAAATCTGAGCATGGAAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1083 TCTAAATTTTCTTGTGGATGTGGCAAACGGAACAAAGGACCCAAAATCTGAGCTTGGAAA 1142
Query 720 TGCATCTCTCAATGATGTTCAGGGGAGTAAAACCAAAACAAAGGATCATAAAAGAAAATG 779
||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1143 CGCATCCCACAATGATGTTCAGGGGAGTAAAACCAAAACAAAGGATCATAAAAGAAAGTG 1202
Query 780 TAAACTTGAGGAAGAGATCAGCAATAACGGTGATCCTACAACATCAGAAACTGCTACACT 839
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TAAACTCGAGGAAGAGATCAGCAATAACGGTGATCCTACAACATCAGAAACTGCTACACT 1262
Query 840 TAAAGGAACGCGTAGGACTCGCCGCAAAAGGTCATCCAATTTTGGGGATTCAAGAATTCC 899
|||| |||||||| ||||||| |||||||||||||| | |||||| ||||| ||||||||
Sbjct 1263 TAAACGAACGCGTCGGACTCGTCGCAAAAGGTCATCTACTTTTGGTGATTCTAGAATTCC 1322
Query 900 ACCATTACCAGGTGCAGCAAGCCTAAAACAGGAGAGGAGAAATGGTCATGTTTGGTTCTC 959
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1323 ACTGTTACCAGGTGCAGCAAGCCTAAAACAGGAGAGGAGAAACGGTCATGTTTGGTTCTC 1382
Query 960 ACTTGTGGCTTCAAATAATCAGGAAGGAGAAGCATCCTTGCCTCAGATTCCAGCAAACTA 1019
|||||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1383 ACTTGTAGCGTCAAGTAATCAGGAAGGAGAAGCATCATTGCCTCAGATTCCAGCAAACTA 1442
Query 1020 CTTGAGAATAAAGGATGGAAATATTCCAGTTTCGTTTATCCAAAAGTACCTTATGAGGAA 1079
||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1443 CTTGAGAATAAGGGATGGAAATATTCCAGTTTCTTTTATCCAAAAGTACCTCATGAGGAA 1502
Query 1080 GCTTGACCTCAAGAGTGAAGCTGAGGTAGAGATAAAATGTATGGGAGAACCAGTGATCCC 1139
|||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1503 GCTTGATCTCAAGAGTGAAGATGAGGTAGAGATAACATGTATGGGAGAACCAGTGATCCC 1562
Query 1140 AACGTTGCAGCTTCACAGCTTAGTAGAGCTATGGTTGGAAACAACTTCTAAGCATCAAAG 1199
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1563 AACGTTGCAGCTTCACAGCTTAGTAGACCTATGGTTGGAAACAACTTCTAAGCATCAAAG 1622
Query 1200 AGTCGCTGCGTCAATAGGTTCCTCTGCAAAGGAATTTGTAATGGTGCTAGTTTATTCTCG 1259
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1623 AGTCGCTGCGTCAATAGGTTCATCTGCAAAGGAATTTGTAATGGTGCTAGTTTATTCTCG 1682
Query 1260 GAAGCTCCCTGAATGCAACAACTAAAGAATTATACATTGAA 1300
|||||||||||||||||||||||||||| ||| |||||||
Sbjct 1683 GAAGCTCCCTGAATGCAACAACTAAAGAGCTATTCATTGAA 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64156296510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5