BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933561
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30590.1 | Symbols: WRKY21 | WRKY DNA-binding protein 21 | c... 1014 0.0
> AT2G30590.1 | Symbols: WRKY21 | WRKY DNA-binding protein 21 |
chr2:13033476-13035593 FORWARD LENGTH=1848
Length=1848
Score = 1014 bits (549), Expect = 0.0
Identities = 624/659 (95%), Gaps = 10/659 (2%)
Strand=Plus/Plus
Query 495 cagcaacaacagcagcagcaacag---cagTTTCATGAACGGTTACAAGCTCACCATCTT 551
||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 920 CAGCAGCAGCAGCAGCAGCAACAGCAACAGTTTCATGAACGGTTACAAGCTCACCATCTT 979
Query 552 CATCAGCAGCAGCAGCTGCAGAAACATCAAGCTGAGCTTATGCTTAGGAAATGCAATGGT 611
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 CATCAGCAACAGCAGCTACAGAAACATCAAGCTGAGCTTATGCTTAGGAAATGCAATGGT 1039
Query 612 GGGATAAGTTTGAGTTTCGATAACTCGAGTTGTACTCCAACCATGTCATCTACTAGGTCC 671
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 1040 GGGATAAGTTTGAGTTTCGATAACTCTAGTTGTACTCCAACTATGTCATCCACTAGGTCC 1099
Query 672 TTTGTTTCTTCACTTAGCATAGATGGTAGTGTTGCTAACATAGAAAGAAAGAACTCGTTT 731
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 1100 TTTGTTTCTTCACTTAGCATAGATGGTAGTGTTGCTAATATAGAGGGAAAGAACTCCTTC 1159
Query 732 CATTTGGTTGGGGTTCCGAGTTCAACGGATCAGAATTCACTACACTCTAAGAGGAAATGT 791
||||| | |||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1160 CATTT--T-GGGGTTCCTAGTTCAACTGATCAGAATTCACTACATTCTAAGAGGAAATG- 1215
Query 792 CCCCT-GAAAGGAGATGAACATGGAGGCTTAAAATGCGGGAGCTCTAGCCGATGCCACTG 850
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1216 CCCCTTGAAAGGAGATGAACATGGAAGCTTAAAATGCGGGAGCTCTAGCCGATGCCACTG 1275
Query 851 CACTAAGAAGAGGAAACATCGGGTTAGGAGATCGATCAGAGTACCGGCTATAAGTAACAA 910
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1276 CGCTAAGAAGAGGAAACATCGGGTTAGGAGATCGATTAGAGTACCGGCTATAAGTAACAA 1335
Query 911 GGTTGCAGATATTCCTCCTGATGATTATTCGTGGCGAAAATATGGTCAGAAACCCATCAA 970
|||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1336 GGTTGCAGATATCCCTCCTGATGATTATTCATGGCGAAAATATGGTCAGAAGCCCATCAA 1395
Query 971 AGGCTCTCCTTATCCCAGGGGATATTACAAATGCAGTAGCATGAGAGGTTGTCCAGCGAG 1030
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1396 GGGCTCTCCTTATCCCAGAGGATATTACAAATGTAGTAGCATGAGAGGTTGTCCAGCGAG 1455
Query 1031 GAAGCATGTTGAGAGATGTTTGGAAGATCCGGCAATGCTTATCGTTACTTATGAAGCAGA 1090
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1456 GAAGCATGTTGAGAGATGTTTGGAAGATCCGGCAATGCTTATTGTTACTTATGAAGCAGA 1515
Query 1091 GCATAACCACCCGAAATTGCCATCTCAAGCTATAACAACTTAACTCTC-TTTCATCTTT 1148
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1516 GCATAACCACCCGAAATTGCCATCTCAAGCTATAACAACTTAACTCTCGTTT-ATCTTT 1573
Score = 719 bits (389), Expect = 0.0
Identities = 467/504 (93%), Gaps = 8/504 (2%)
Strand=Plus/Plus
Query 19 AGATGGAGGAGATAGAAGGAACAAACAGAGCAGCTGTAGAGAGTTGTCATAGAGTTCTTA 78
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 414 AGATGGAGGAGATAGAAGGAACAAACAGAGCAGCTGTTGAGAGTTGTCATAGAGTTCTTA 473
Query 79 ATCTTTTACAAAGACCACAACAACAAGATCGTGTTGGGTTTGACAGGACTTTGGTGTCTG 138
|||||||||| ||| |||| |||||||||| |||||| ||||| | || ||| || ||||
Sbjct 474 ATCTTTTACATAGATCACAGCAACAAGATCATGTTGGTTTTGAAAAGAATTTAGTATCTG 533
Query 139 AAACTAGAGAAGCTGTGATTAGGTTCAAGAGAGTTGGGAGTTTGTTAGGCAGTAGTGTGG 198
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 534 AAACTAGAGAAGCTGTGATTAGGTTCAAGAGAGTTGGGAGTTTGTTAAGCAGTAGTGTTG 593
Query 199 GTCATGCTAGGTTTAGAAGAGCTAAGAAAGTTCAGACTAATTTGC-CTCAAAGCCTCTTT 257
||||||||||||||||||||||||||||| |||||| | || | | ||||||| |||||
Sbjct 594 GTCATGCTAGGTTTAGAAGAGCTAAGAAACTTCAGAGTCATGT-CTCTCAAAGTCTCTTA 652
Query 258 GTTGATCCATGTCAACAAAGAACTACAACAGAAGTTCCATCATCATCGTCTCAGAAAACA 317
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 653 CTTGATCCATGTCAACAAAG---GACAACAGAAGTTCCATCATCATCTTCTCAGAAAACA 709
Query 318 CCGGTACTCCGGTCTGGTTTCCAGGAATTGAGCTTGAGACAACCTTCAGATTCATCACTC 377
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 710 CCGGTACTCCGGTCTGGTTTCCAGGAATTGAGCTTGAGACAACCTTCAGATTCA-C--TC 766
Query 378 ACTTTAGGGACTCGCTCTTTCAGTTTAAACTCAAATGCTAAAGCTCCTCTCCTTCAGCTT 437
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 767 ACTTTAGGGACTCGCTCTTTTAGTTTAAACTCAAATGCTAAAGCTCCTCTCCTTCAGCTT 826
Query 438 AACCAGCAGACAATGCCTCCTTCGAATTATCCTACTTTGTTTCCAGTacaacaacaacag 497
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 AATCAGCAGACAATGCCTCCTTCGAATTATCCTACTTTGTTTCCAGTACAACAACAACAA 886
Query 498 caacaacagcagcagcaacagcag 521
|||||||| || || ||||| |||
Sbjct 887 CAACAACAACAACAACAACAACAG 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56576014215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5