BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933576
Length=641
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30695.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 935 0.0
> AT2G30695.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: protein folding, protein transport; LOCATED
IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins
in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source:
NCBI BLink). | chr2:13079090-13081362 REVERSE LENGTH=882
Length=882
Score = 935 bits (506), Expect = 0.0
Identities = 598/643 (93%), Gaps = 4/643 (1%)
Strand=Plus/Plus
Query 1 AGAACCAGCAGCTATCGATAATGCAGACAATCATTCACAATCTCTCGTTTTGTAGCTTTA 60
||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 84 AGAACCAACAGCTATAGATAATGCAGACAATCATCCACAGTCTCTCGTTTTGTAGCTTTA 143
Query 61 ATTCTACAGTTATTGATCCCAAACCAAG-TTTCCAATTTTCTTC-TTTTGTAACTCTTCC 118
| |||||| ||| |||| ||||| || ||| ||||||||||| |||| ||||||||||
Sbjct 144 ACTCTACAACAATTAATCCAAAACCCAGATTT-CAATTTTCTTCGTTTT-TAACTCTTCC 201
Query 119 TCCAACTTTTTCAGTGCAACAGAAACTCTATACAAGAGCAACGAATAAAAAATTTATCGC 178
|||||||| |||||||||||||||||||| ||||||||||||||||| | | ||| ||||
Sbjct 202 TCCAACTTATTCAGTGCAACAGAAACTCTGTACAAGAGCAACGAATAGACAGTTTGTCGC 261
Query 179 CGTTTCTGCAGCACCATCAGATGTAGAGACTTCTTCTAAGGATGAATCTTTTTTGGTTAC 238
|||| ||| |||||||||||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 262 GGTTTGTGCTGCACCATCAGATGTAGAGACTTCTTCCAAGGATGAATCTGTTTTGATTAC 321
Query 239 GAAAGTAGAGACTGAAAACAGCAATGAAGTTAAGGTGCATGTACAAGTATCAGGAGAGAA 298
|||||| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct 322 GAAAGTGGAGACTGAAACCAGCAATGAGGTTAAGGTGCATGTACAAGTGTCAGGAGAGAA 381
Query 299 GACTCAAACAGTATTCAATCATGTATTCGAGAAAATGGTTGCTGCAGCTCAGCCAATTCC 358
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 382 GACTCAAACTGTATTCAATCATGTTTTTGAGAAAATGGTTGCTGCAGCTCAGCCAATCCC 441
Query 359 AGGGTTCCGAAGAGTTAAAGGAGGGAAGACCCCAAATATACCCAGAGATGTTTTGCTAGA 418
||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||
Sbjct 442 GGGGTTCCGAAGAGTTAAAGGAGGAAAGACCCCAAATATACCCAAAGATGTTTTGTTAGA 501
Query 419 GATCCTTGGATATTCTAAAGTCTATAGGCAGGTGATAAAGAAATTAATCAATTCTGCTAT 478
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 502 GATCCTTGGATATTCTAAAGTCTATAAGCAGGTGATAAAGAAATTAATCAATTCTGCTAT 561
Query 479 CGAAGACTATGTTAAACAGGAAGACTTTAAGGTTGGCAAAGAGTTGAGTGTTGAGCAAAG 538
||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 562 CGAAGACTATGTTAAACAGGAAGACCTTAAGGTTGGCAAAGAGTTGACTGTTGTGCAAAG 621
Query 539 CTATGAAGATCTTGAAGAAACATTTGAACCAGGTGAAAGTTTCAGCTTTGATGCTATTAT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 622 CTATGAAGATCTTGAAGAAACATTTGAACCAGGTGAAAGTTTCAGCTTTGATGCTACTAT 681
Query 599 AAAGCTTCAAGAAGCGAGTTGAAGAAAGCGTTGATCCTAAGGT 641
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct 682 AAAGCTTCAAGAAGCGAGTTGAAGAAAGCGGTGATCCTAAGGT 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30944234552
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5