BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933578
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30710.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2255 0.0
> AT2G30710.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr2:13085886-13089261 REVERSE LENGTH=1854
Length=1854
Score = 2255 bits (1221), Expect = 0.0
Identities = 1316/1363 (97%), Gaps = 2/1363 (0%)
Strand=Plus/Plus
Query 1 AACTGAAAC--AAATAAAAACCATGGAGAAGAGAGAAGACGAGCAACAAAAGCGCGACGA 58
||||||||| ||| | ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 249 AACTGAAACAGAAACAGAAACCATGGAGAAGAGAGAAGACGAACAACAAAAGCGCGACGA 308
Query 59 TTCCAGATTCAATCAAACACTCAAGAACGTCCAAGGGTTTCTTAAAGGTAGAAGTATTCC 118
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TTCTAGATTCAATCAAACACTCAAGAACGTCCAAGGGTTTCTTAAAGGTAGAAGTATTCC 368
Query 119 TGGTAAGGTATTGTTGACTAGGAGATCAGATCCTCCTCCATACCCAATCTCTCCAACATA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TGGTAAGGTATTGTTGACTAGGAGATCAGATCCTCCTCCATACCCAATCTCTCCAACATA 428
Query 179 TCAACGGAGCTTATCGGAGAATGACGCCGGTCGAAATGAGCCATTTGAGAGTCCCGTTGA 238
||||||||||||||| |||||||||||||| ||||||||| ||| || ||||| |||||
Sbjct 429 TCAACGGAGCTTATCTGAGAATGACGCCGGAAGAAATGAGCTATTCGAAAGTCCTGTTGA 488
Query 239 GGTGGAAGATCACAATTCAAGTAAGAAACATGATAATACGTATGCTGGTAAGCTACGATC 298
|||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 489 GGTGGAGGATCACAATTCAAGCAAGAAACATGATAATACATATGCTGGTAAGCTACGATC 548
Query 299 AAACTCTAGTGCTGAAAGAAGTGTGAAAGAAGTTCAGAACTTGAAGATAGGTGTTAGATC 358
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 549 AAACTCTAGTGCTGAAAGGAGTGTGAAAGAAGTTCAAAACTTGAAGATAGGTGTTCGATC 608
Query 359 AAGTGATTCTGCTAGAGTTATGAAGTTCAACAAAGTGCTTTCAGAAACAACTGTCATCTT 418
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 609 AAGTGACTCTGCTAGAGTTATGAAGTTCAACAAAGTGCTTTCAGAAACAACTGTCATATT 668
Query 419 AGAGAAACTGCGCGAACTAGCATGGAATGGTGTGCCACACTATATGCGGCCTGATGTCTG 478
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 669 AGAGAAACTGCGCGAGCTAGCATGGAATGGTGTACCACACTATATGCGGCCTGATGTCTG 728
Query 479 GCGGCTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGCTGTTCTGAGAAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GCGGCTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGCTGTTCTGAGAAG 788
Query 539 AAAACGTCTTGAATATCTGGAATCTGTTGGCCAATTTTATGACCTTCCAGATTCAGAACG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 789 AAAACGTCTTGAATATCTGGAATCTGTTGGCCAATTTTATGACCTTCCAGATTCCGAACG 848
Query 599 TTCTGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGACTGTCCAAGGACTGTACC 658
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 849 TTCTGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGACTGTCCGAGGACTGTACC 908
Query 659 AGATGTCAGTTTCTTTCAGCAAGAACAGGTGCAGAAATCACTGGAGCGTATTCTTTACAC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 AGATGTCAGTTTCTTTCAGCAAGAACAGGTGCAGAAATCACTGGAGCGTATTCTTTACAC 968
Query 719 GTGGGCCATTAGGCATCCAGCGAGCGGATACGTTCAGGGAATAAATGACCTGGTCACGCC 778
|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 969 GTGGGCCATTAGACATCCAGCAAGCGGATATGTTCAGGGAATAAATGACCTGGTCACGCC 1028
Query 779 CTTCCTAGTTATTTTCTTGTCAGAATATCTAGATGGCGGTGTTGACAGTTGGTCAATGTC 838
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1029 CTTCCTAGTGATTTTCTTGTCAGAATATCTAGATGGCGGTGTAGACAGTTGGTCAATGGA 1088
Query 839 TGATCTATCTGCTGAAAAAGTCTCAGATGTAGAAGCGGATTGCTACTGGTGCTTAACAAA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TGATCTATCTGCTGAAAAAGTCTCAGATGTAGAAGCGGATTGCTACTGGTGCTTAACAAA 1148
Query 899 GCTACTTGATGGTATGCAAGATCATTACACGTTTGCTCAACCTGGAATCCAGAGACTTGT 958
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 GCTCCTTGACGGTATGCAAGATCATTACACGTTTGCTCAACCTGGAATCCAGAGACTTGT 1208
Query 959 GTTTAAGTTGAAGGAACTGGTCAGGCGTATTGATGAACCTGTTTCAAGACACATGGAAGA 1018
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1209 GTTTAAGCTGAAGGAACTGGTCAGGCGTATCGATGAACCTGTTTCAAGACACATGGAAGA 1268
Query 1019 GCATGGGCTGGAGTTTCTTCAGTTTGCTTTCCGGTGGTATAACTGTCTTCTCATTCGTGA 1078
||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 1269 GCATGGGCTAGAGTTTCTTCAATTTGCTTTCCGGTGGTATAATTGTCTTCTGATTCGTGA 1328
Query 1079 GATCCCTTTCAATCTCATCAACCGCCTATGGGACACATATCTTGCTGAAGGAGATGCGTT 1138
|||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1329 GATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTT 1388
Query 1139 GCCAGACTTCCTAGTGTATATATATGCTAGCTTTCTTTTGACGTGGTCTGATGAGCTGAA 1198
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1389 GCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGTGGTCTGATGAGCTGAA 1448
Query 1199 GAAGCTAGATTTTCAAGAAATGGTAATGTTCCTGCAACACCTTCCGACACATAACTGGTC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 GAAGCTAGATTTTCAAGAAATGGTAATGTTCCTGCAACACCTTCCGACACATAACTGGTC 1508
Query 1259 AGACCAAGAGCTCGAAATGGTGTTGTCAAGAGCTTACATGTGGCATAGTATGTTCAATAA 1318
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1509 AGACCAAGAGCTCGAAATGGTTTTGTCAAGAGCTTACATGTGGCATAGTATGTTCAATAA 1568
Query 1319 TTCCCCAAACCATTTGGCTAGCTGAAATGACTTTTCCTCCATG 1361
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 TTCCCCAAACCATTTGGCTAGCTGAAATGACTTTTCCTCCATG 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5