BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933590
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30790.1 | Symbols: PSBP-2 | photosystem II subunit P-2 | ch... 1225 0.0
> AT2G30790.1 | Symbols: PSBP-2 | photosystem II subunit P-2 |
chr2:13118937-13120090 REVERSE LENGTH=901
Length=901
Score = 1225 bits (663), Expect = 0.0
Identities = 768/817 (94%), Gaps = 13/817 (2%)
Strand=Plus/Plus
Query 21 ATGGCATACAGCGCGTGCTTCTTGCACCAAAGTGCACTTGCCTCCTCCACCGGACGATCA 80
||||| |||||| || ||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1 ATGGCGTACAGCCCGAGCTTCTTACACCAGAGTGCACTTGCCTCCTCTGCCGGACGATCA 60
Query 81 TCA----C--CTTCCTCGTCGTCCCGTCATGTGTCCCTCTCGAGACCTGTCCATTTAGTA 134
||| | |||| ||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCATCTTCATCTTCATCGTCGTTTCGTCATGTGTCCCTCTCGAGACCCGTCCATTTAGTA 120
Query 135 TGTAGAGCTCAACAGTCTCAGGAAGACGATAACTCTGCTGTTTCCCGCCGTCTTGCTCTC 194
|||||||||||||||||||||||| || ||||||||||||||| |||||||||||| ||
Sbjct 121 TGTAGAGCTCAACAGTCTCAGGAAAACAATAACTCTGCTGTTTTCCGCCGTCTTGCCCTT 180
Query 195 ACCTTACTCGTTGGTGCTGCAGCCATCGGATCCAAAGTCTCTCCTGCTGACGCCGCCTAT 254
|||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 181 ACCTTACTCGTTGGTGCTGCAGCCATCGGATCCAAAGTCTCT-C--CTG-CGCCGCCTAT 236
Query 255 GGTGAAGCCGCTAATGTGTTTGGTAAGCCAAAGAAGAACACAGATTTCCTGCCGTACACT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 GGTGAAGCCGCTAATGTGTTTGGTAAGCCAAAGAAGAACACAGATTTCCTGCCATACACA 296
Query 315 GGAGAAGGATTCAAAATCCAGATCCCATCAAAGTGGAACCCCAGTAAAGAAATTGAGTAT 374
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 297 GGAGAAGGATTCAAAATCCAGATCCCATCAAAGTGGAACCCAAGTAAAGAAATTGAGTAT 356
Query 375 CCAGGACAAGTCCTAAGGTTCGAGGACAACTTTGACGCCACCAGCAATGTCTCTGTCATG 434
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCAGGACAAGTACTAAGATTCGAGGACAACTTTGACGCCACCAGCAATGTCTCTGTCATG 416
Query 435 ATCACTCCTACAGACAAGAAATCCATCACTGATTACGGTTCTCCCGAACAGTTCCTCTCT 494
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 417 ATCACTCCTACAGACAAGAAATCCATCACTGATTACGGTTCTCCTGAACAGTTCCTCTCT 476
Query 495 CAGGTGAATTATCTCCT-GGGAAAGCAAGCTTACTTCGGCGAAACAGCCTCTGAGGGAGG 553
||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 477 CAGGTGAATTATCTCCTCGGGAA-GCAAGCTTACGTCGGCGAAACAGCCTCTGAGGGAGG 535
Query 554 GTTTGATGCAAATGCAGTAGCAACTGCAAACATTCTGGAAACATCTACACAAGATATCGG 613
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 536 GTTTGATGCAAATGCAGTAGCAACTGCAAACATTTTGGAAACATCTACACAAGAAATCGG 595
Query 614 TGGGAAACAGTACTATTACTTGTCGGTTTTGACAAGAACAGCTGATGGAGATGAAGGTGG 673
|||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 596 AGGGAAAGAATACTATTACTTGTCGGTTCTGACAAGAACAGCTGATGGAGATGAAGGTGG 655
Query 674 GAAGCACCAACTGATAACAGCCACTGTGAACGGTGGAAAGCTTTACATCTGCAAAGCACA 733
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 656 GAAGCACCAACTGATAACAGCCACTGTGAATGGTGGAAAGCTTTACATTTGCAAAGCTCA 715
Query 734 AGCAGGAGACAAGAGGTGGTTCAAAGGAGCTAGGAAGTTCGTCGAGAATGCTGCTACTTC 793
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 716 AGCAGGAGACAAGAGGTGGTTCAAAGGAGCTAGGAAGTTCGTTGAGAATGCTGCTACGTC 775
Query 794 CTTCAGTGTTGCTTGAAACTGAATTATAAACATTAAT 830
|||||||||||||||| | ||||| ||||||||||||
Sbjct 776 CTTCAGTGTTGCTTGATA-TGAATCATAAACATTAAT 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40438488335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5