BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933591
Length=3945
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tiss... 6336 0.0
AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase | chr1:20... 2222 0.0
> AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissue
and tapetum | chr2:13120353-13126770 REVERSE LENGTH=4267
Length=4267
Score = 6336 bits (3431), Expect = 0.0
Identities = 3799/3971 (96%), Gaps = 48/3971 (1%)
Strand=Plus/Plus
Query 1 AGAGAGAGAGCAAACCCTAAT-AGCGATGGGGAACAAGAGATTCAGGTCTGATAATGCA- 58
||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 110 AGAGACAGAGCAAAGCCTAATAAGCGATGGGGAACAAGAGATTCAGGTCTGATAAT-AAT 168
Query 59 GCAGGGAAACCAACTTCCGTCGAAGCTACTAGGATTTGGGCCACTAAGGTCATCGAAGAC 118
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 169 GCAGGGAAACCAACTTCCGTCGAAGCTACTAGGATTTGGGCGACTAAGGTCATCGAAGAC 228
Query 119 TTTCGAGCCTCCGGGAACGAAGTTTACACGTTTGAGCATAATCTATCAAATAGCGAACGT 178
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 229 TTTCGAGCCTCTGGGAACGAAGTTTACACGTTTGAGCATAATCTATCAAATAACGAACGT 288
Query 179 GGAGTCATTCATCAGATGTGCCGGAAAATGGGTATTCAATCGAAAAGTTCTGGGCGTGGG 238
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 289 GGAGTGATTCATCAGATGTGCAGGAAAATGGGTATTCAATCGAAAAGTTCTGGGCGTGGG 348
Query 239 GAACAAAGGCGTCTTTCAATATTCAAAAGTAGGCATAAGAATGGAAAGAACAATGAAGCC 298
||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 349 GAACAAAGGCGTCTTTCGATATTCAAAAGTAGGCATAAGAATGGAAACAAGAATGAAGCT 408
Query 299 AATGAGAAATCAAATAAAGAGAAGCTTAAATGTGTGTCATTTCCGCCGGGATCAGATGCT 358
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
Sbjct 409 AATGAGAAATCAAATAAAGAGAAGCTCAAATGTGTGTCATTTCCGCCGGGAGCAGATGTT 468
Query 359 ATTCTGCAGGAGTTATTTACTCACTACCCACCTTGTGACGGAGATACCGCTGCAACATCG 418
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 469 ATTCTGCAGGAGTTATTTACTCATTACCCACCTTGTGATGGAGATACGGCTGCAACATCG 528
Query 419 TTTAACAAGTACTCTGGTAACAAGGGTAAACAAGGACAATGGAAAGATGATTTTTTCCGG 478
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TTTACCAAGTACTCTGGTAACAAGGGTAAACAAGGACAATGGAAAGATGATTTTTTCCGG 588
Query 479 AAACCACAGATTAGCAATGAGGAGATTCTTGAAAAAGTGGCATCTTTGAGTTCTAGACTT 538
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 589 AAACCACAGATTAGCAGTGAGGAGATTCTAGAAAAAGTGGCATCTTTGAGTTCTAGACTT 648
Query 539 AAAAAGGATAAAGCTCTTAAGGAGATCTCTAAGCTGCGGTCGAAGCTTCCCATCACATCC 598
|| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 649 AAGAAGGATAAAGCTCTTAAGGAGATCACTAAGCTGCGGTCAAAGCTTCCCATCACATCC 708
Query 599 TATAAAGACGCAATCACATCTGCAGTGGAATCCAATCAGGTTATTCTCATTTCTGGTGAA 658
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TTTAAAGACGCAATTACATCTGCAGTGGAATCCAATCAGGTTATTCTCATTTCTGGTGAA 768
Query 659 ACTGGTTGCGGGAAAACTACTCAGGTGCCTCAATATCTTTTAGACCATATGTGGTCAAGC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 ACTGGTTGCGGGAAAACTACTCAGGTGCCTCAATATCTTTTAGACCATATGTGGTCAAGC 828
Query 719 AAAAGAGAAACTTGCAAAATTGTTTGCACCCAACCTCGTCGGATATCCGCCATGTCAGTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 AAAAGAGAAACTTGCAAAATTGTTTGCACCCAACCTCGTCGGATATCCGCCATGTCAGTT 888
Query 779 TCTGAAAGAATATCTTGTGAAAGAGGTGAAAGCATTGGAGAAAACATTGGTTACAAGGTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCTGAAAGAATATCTTGTGAAAGAGGTGAAAGCATTGGAGAAAACATTGGTTACAAGGTT 948
Query 839 CGACTCCAAAGCAAAGGTGGAAGGCACTCATCAGTTGTTTTCTGCACGAATGGCATTCTC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 949 CGACTCCAAAGCAAAGGTGGAAGGCACTCATCAGTTGTTTTCTGCACGAATGGTATTCTC 1008
Query 899 CTGAGGGTGCTTGTAGGAAAAGGCTCTGTTAGCAGTGTTTCCGACATAACTCACATCATT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 CTGAGGGTGCTTGTAGGAAAAGGCTCTGTTAGCAGTGTTTCCGACATAACTCACATCATT 1068
Query 959 GTGGATGAAATCCATGAAAGAGATTGCTATTCTGATTTCATGTTGGCAATAATAAGGGAT 1018
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1069 GTGGATGAAATCCATGAAAGAGATTGCTATTCTGATTTCATGTTGGCAATTATAAGGGAT 1128
Query 1019 TTACTTCCATCAAATCCTCATCTCCGTTTGATTCTCATGAGTGCTACACTTGATGCTGAG 1078
|| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1129 TTGCTTCCATCAAATCCCCATCTCCGTCTGATTCTCATGAGTGCTACGCTTGATGCTGAG 1188
Query 1079 AGATTTTCGGGATATTTTGGAGGTTGCCCGGTTGTCCGTGTCCCTGGATTCACTTATCCA 1138
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 AGATTTTCTGGATATTTTGGAGGTTGCCCGGTTGTCCGTGTCCCTGGATTCACTTATCCA 1248
Query 1139 GTGAGAACCTTATATTTGGAGGATGTGCTCTCTATTCTGAAATCAGGTGGAGATAATCAT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GTGAGAACCTTATATTTGGAGGATGTGCTCTCTATTCTGAAATCAGGTGGAGATAATCAT 1308
Query 1199 CTAAGCTCTGCCAACTTGAGTATACCAGACCACAAGCTTGATTTGACGGATGAAGATAAA 1258
||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1309 CTAAGCTCTACCAACTTGAGTATATCAGACCACAAGCTTGATTTGACGGATGAGGATAAA 1368
Query 1259 CTTGCTTTAGATGAAGCAATCATCTTGGCTTGGACAAATGACGAGTTTGATACCCTCTTA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1369 CTTGCTTTAGATGAAGCAATCATCTTGGCTTGGACAAATGACGAGTTTGATGCCCTCTTA 1428
Query 1319 GATCTAGTTTCTTCTAGAGGAAGTCATGAGATCTACAATTATCAGCACCAATCAACCTGG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 GATCTAGTTTCTTCTAGAGGAAGTCATGAGATCTACAATTATCAGCACCAATCAACCTGG 1488
Query 1379 CTAACACCACTAATGGTCTTTGCTGGAAAGGGCAGGATCAGTGATGTCTGCATGCTCCTA 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 CTAACACCACTAATGGTCTTTGCTGGAAAGGGCAGGATCAGTGATGTCTGCATGCTCCTC 1548
Query 1439 TCATTTGGTGCGGACTGGAACTTAAAGTCTAAAGATGGTATGACTGCATTAGAATTGGCT 1498
|| |||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 TCCTTTGGTGCAGATTGGAGCTTAAAGTCTAAAGATGGTATGACTGCATTAGAATTGGCT 1608
Query 1499 GAAACAGAGAATCAACTAGAAGCTGCTCAAATAATCAGGGAGCATGCAGACAATTTCCAG 1558
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1609 GAAGCAGAGAATCAACTAGAAGCTGCTCAAATAATCAGGGAGCATGCAGACAATTCCCAG 1668
Query 1559 TCTAATTCTCAGCAAGGACAACAGTTACTTGATAAATACATGGCGACAATCAACCCAGAG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 TCTAATTCTCAGCAAGGACAACAGTTACTTGATAAATACATGGCGACAATCAACCCAGAG 1728
Query 1619 CAGGTCGATGTGAGTCTTATACAGCAGTTAATGAGGAAAATATGTGGCGATTCAGAAGAT 1678
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1729 CAGGTCGATGTGAGTCTTATACAACAGTTAATGAGGAAAATATGTGGCGATTCAGAAGAC 1788
Query 1679 GGTGCCATTCTTGTTTTTCTACCTGGATGGGATGATATAAATAAAACAAGACAGAGATTA 1738
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 GGTGCGATTCTTGTTTTTCTACCTGGATGGGATGATATAAATAAAACAAGACAGAGATTA 1848
Query 1739 CTTGATAACCCTTTCTTCGCAGATAGTGCTAAATTCGACATTATATGTCTTCACTCAATG 1798
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 CTTGAGAACCCTTTCTTTGCAGATAGTGCTAAATTCGACATTATATGTCTTCACTCAATG 1908
Query 1799 GTTCCAGCAGGGGAACAGAAGAAAGTTTTTAATCGCCCCCCTCGAGGTTGTCGTAAAATC 1858
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1909 GTTCCAGCAGGGGAACAGAAGAAAGTTTTTAATCGCCCCCCTCCAGGTTGTCGCAAAATT 1968
Query 1859 GTGCTTGCGACAAATATTGCTGAATCAGCAGTTACCATTGATGATGTGGTTTATGTGATA 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 GTGCTTGCGACAAATATTGCTGAATCAGCAGTTACCATTGATGATGTGGTTTATGTGATA 2028
Query 1919 GATAGTGGCCGGATGAAGGAAAAGAGCTATGATCCTTATAATAATGTTTCAACTCTCCAA 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 GATAGTGGCCGGATGAAGGAAAAGAGCTATGATCCTTATAATAATGTTTCAACTCTCCAA 2088
Query 1979 TCTTCTTGGGTATCAAAAGCAAATGCAAAACAGCGTGAGGGTCGAGCAGGCCGCTGCCAA 2038
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2089 TCTTCTTGGGTATCAAAAGCAAATGCAAAACAGCGTCAGGGTCGAGCAGGCCGCTGCCAA 2148
Query 2039 CCTGGCATTTGTTATCATCTCTATTCTAGACTTCGGGCAGCCTCTATGCCAGATTTTAAA 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2149 CCTGGCATTTGTTATCATCTCTATTCTAGACTTCGGGCAGCCTCTATGCCAGATTTTAAA 2208
Query 2099 GTTCCTGAAATCAAGAGGATGCCGGTAGAAGAACTCTGCTTACAGGTTAAGATACTTGAT 2158
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2209 GTTCCTGAAATCAAGAGGATGCCGGTAGAAGAACTCTGCTTACAAGTTAAGATACTTGAT 2268
Query 2159 CCAAATTGTAAAACAAATGATTTCCTTCAGAAATTGTTGGACCCGCCTGTTGATCAAAGT 2218
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2269 CCAAATTGTAAAACAAATGATTTCCTTCAGAAACTGTTGGACCCGCCTGTTGATCAAAGT 2328
Query 2219 ATTGCAAACGCCTTAAGCATACTACAGGATATCGGGGCCCTGACACCTCAGGAAGAGCTG 2278
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2329 ATTGCAAACGCCTTAAGCATACTACAGGATATTGGTGCCCTGACACCTCAGGAAGAGCTG 2388
Query 2279 ACAGAACTTGGAGAGAAATTTGGTCATCTCCCAGTTCATCCTCTGATTAGCAAAATGCTT 2338
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2389 ACAGAACTTGGAGAGAAATTTGGTCATCTCCCAGTTCATCCTCTGATTAGCAAAATGCTA 2448
Query 2339 TTCTTCGCTGTATTAGTAAACTGTCTGGATCCAGCACTTACTCTGGCATGTGCAGCGGAC 2398
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2449 TTCTTCGCTGTGTTAGTAAACTGTCTGGATCCAGCACTTACTCTGGCATGTGCAGCAGAC 2508
Query 2399 TACAAGGAACCATTTACTATGCCTATGTCGCCAGGTGAAAGACAGAAAGCTGCTGCTGCA 2458
||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||
Sbjct 2509 TACAAGGAACCATTTACGATGCCCATGTCGCCTGTTGAAAGACAGAAAGCTGCTGCTGCA 2568
Query 2459 AAACTTGAACTTGCATCACTTTGTGGAGGTGACAGTGATCACCTTGCAGTTGTTGCTGCC 2518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2569 AAACTTGAACTTGCATCACTTTGTGGAGGTGACAGTGATCACCTTGCAGTTGTTGCTGCC 2628
Query 2519 TTTGAGTGCTGGAAAAACGCAAAAGAAAGAGGTCTTTCGGCAGAGTTTTGCTCTCAGTAC 2578
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 2629 TTTGAGTGCTGGAAAAACGCAAAAGGAAGAGGTCTTTCAGCAGAGTTTTGCTCTCAGTAC 2688
Query 2579 TTTGTCTCTCCAAGTGCTATGAAGATGTTGGATCAAATGCGTAGCCAACTTGAGTCGGAA 2638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2689 TTTGTCTCTCCAAGTGCTATGAAGATGTTGGATCAAATGCGTAGCCAACTTGAGTCGGAA 2748
Query 2639 CTTAAAAGACATGGGATTATTCCTAACGACATTTCTAGTTGTAGCCAAAATTCGCGTGAT 2698
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2749 CTTAAAAGACATGGGATTATTCCTAACGACATTTCAAGTTGTAGCCAAAATTCGCGTGAT 2808
Query 2699 CCTGGTATACTCCGTGCTGTGCTAGCAGTAGGATTGTATCCTATGGTGGGAAGATTGTGC 2758
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2809 CCCGGTATACTCCGTGCTGTGCTAGCAGTAGGATTGTATCCTATGGTGGGAAGATTGTGC 2868
Query 2759 CCAGCTTTTGGTAATAATCGAAGAACTATAGTAGAAACTGCTAGTGGTGCCAAAGTCCGT 2818
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 2869 CCAGCTTTTGGTAATAATCGAAGAACTATAGTAGAGACTGCTAGTGGTGCTAAAGTTCGT 2928
Query 2819 GTGCATTCGCTGTCAAACAACTTCAACTTGTCGTCTAAAAAGTATGATAAATCTTTAGTT 2878
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2929 GTCCATTCGCTGTCAAACAACTTCAACTTGTCGTCTAAAAAGTATGATGAATCTTTACTC 2988
Query 2879 GTTTTCGATGAGATCACTCGTGGAGATGGAGGCATGCACATAAGAAACTGTACTGTTGCT 2938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2989 GTTTTCGATGAGATCACTCGTGGAGATGGAGGCATGCACATAAGAAACTGTACTGTTGCT 3048
Query 2939 CGTGATCTTCCTTTGTTACTTGTCTCAACAGAGATAGCTGTGGCTCCTACAGGGAGCAGT 2998
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 3049 CGTGATCTTCCTTTGTTACTTATCTCAACAGAGATAGCTGTGGCCCCTACAGGGAGCAGT 3108
Query 2999 GATTCTGATGATAGTGATgaagaagaagaagatgaagaagaagTAGGAGCTAATACTAAT 3058
||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 3109 GATTCTGATGATAGTAATGAAGAAGAAGAAGATGATGAAGAAGTAGCAGCTAATACTAAT 3168
Query 3059 GAAGA-----CAG--AAT------G--GA---------CATACATAAAGAAGAGAGTAGG 3094
||||| ||| ||| | || ||||||||||||||||||||||
Sbjct 3169 GAAGAAGTAGCAGCTAATACTAATGAAGAAGGAATGGACATACATAAAGAAGAGAGTAGG 3228
Query 3095 CGTGGAGCGAAAATGATGTCTTCACCTGAAAATTCAGTCAAATTGGTAGTTGATCGCTGG 3154
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 3229 CGTGGAGCGAAAATGATGTCTTCACCTGAAAATTCAGTCAAGTTAGTAGTTGATCGCTGG 3288
Query 3155 CTGCCTTTCAGAACCACAGCCCTTGAAGTTGCTCAAATGTACATTTTGCGGGAAAGACTA 3214
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3289 CTGCCTTTCAGAACCACAGCCCTTGAAGTTGCTCAAATGTACATTTTGCGGGAACGACTA 3348
Query 3215 ATGGCGTCTATTTTATTCAAGGTAACACATCCACGGGAACATTTGCCGCCTCATCTCGGA 3274
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3349 ATGGCTTCTATTTTATTCAAGGTAACACATCCACGGGAACATTTGCCACCTCATCTCGGA 3408
Query 3275 GCTTCTATGCATGCAATAGCTGGTATTCTCTCATATGATGGTCAAGCAGGACTTTCATAT 3334
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 3409 GCTTCTATGCATGCAATAGCTGGTATTCTCTCATATGATGGTCATGCAGGACTTTCATGT 3468
Query 3335 ACACCGGAGTCTATGGGACCAAAACATTCAAGGAATGAGATGTATGATACTGGTGGATGG 3394
||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 3469 CCACCGGAGTCTATGGTACCAAAACATTCAAGGACTGAGATGTATGATACCGGTGGATGG 3528
Query 3395 GAAGAGAAACCAAACTCTTTCCTCAACTCTCTCTTTTGGTCTCTGAGTTTGAAAGAGAAC 3454
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 3529 GAAGAGAAACCAAACTCTTTCCTTAACTCACTCTTTTGGTCTCTGAGTTTGAAAGAGAAC 3588
Query 3455 AAGCATCCAAGTCACATGAATAGGAATCGGCAGCATGGTTTCAACATGGCTCCAACAGAA 3514
|||||||| ||||||| ||||||||||| ||||||| | |||||||||||||||||||
Sbjct 3589 AAGCATCCTAGTCACACGAATAGGAATCAGCAGCATAACTACAACATGGCTCCAACAGAA 3648
Query 3515 GCTGCATCGATACCGAGGCAGCAAAAC-ATTAAGCAAAGAAATCCCAAATCAGCCAACAA 3573
|||||||| ||||| |||||||||||| || |||||||||||||||||| || |||||||
Sbjct 3649 GCTGCATCAATACCTAGGCAGCAAAACTAT-AAGCAAAGAAATCCCAAAGCAACCAACAA 3707
Query 3574 TACTGATTCGGGTAAGAAAAAAGAGAAGATGTTTGATAATCCCACCAATGGGATCAATCA 3633
||| |||||||||||||| |||||||||||||||| ||||||||||||| |||| || ||
Sbjct 3708 TACCGATTCGGGTAAGAAGAAAGAGAAGATGTTTGTTAATCCCACCAATAGGATTAACCA 3767
Query 3634 GCCTGAAGCTGCTTCTACGGGTAAGCCATCAAAGTACAAATCAAGC-AACAGTTCGGGTG 3692
|||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 3768 GCCTGAAGCTGCTTCTACGGGTAAGCCATCAAAGCACAAATCA-GCCAACAGTTCGGGTT 3826
Query 3693 CAAGTAACAAGAAAGAGAACATGCCTTCTGATCAGGCCCACGGGAATAAGCAACATAACA 3752
| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 3827 CGAGTAACAAGAAAGAGAACATGCCTTCTGATCAGGCCTATGGGAATAAGCAACATAACA 3886
Query 3753 CAGTTCCAAAAGAAGCTGCTGCACCAATGGCGAAGAATCAAAGCAGTAAGAAAAAGAAGA 3812
||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 3887 CAGTTCCAAGAGAAGCTGCCGCACCAATGGCGAAGAATCAAAGCAGTAAGAAAACCAAGA 3946
Query 3813 CCAGGTCAGGCAACAACTCGGATTCGGGTAAGAAGAAAGACATGTATGTTCCAAAGATAG 3872
|||||||||||||||||||||||||||||||||||||||| | | || | ||
Sbjct 3947 CCAGGTCAGGCAACAACTCGGATTCGGGTAAGAAGAAAGA-AC--A-GT---A----TA- 3994
Query 3873 ATATCCACAAAAGGCAACGCGAAGACAAAGCAGAACAGAAGGGAGATGCATGAAGACCA- 3931
| |||| || |||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 3995 -T-TCCA-AAGAGGCAACGCGAAGACAAAGCAGAACAGAAGTGAGATGCATGAAAAG-AG 4050
Query 3932 ATTGTTTTTGG 3942
|||||||||||
Sbjct 4051 ATTGTTTTTGG 4061
> AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase | chr1:2040433-2047612
FORWARD LENGTH=5144
Length=5144
Score = 2222 bits (1203), Expect = 0.0
Identities = 2469/3061 (81%), Gaps = 163/3061 (5%)
Strand=Plus/Plus
Query 318 AGAAGCTTAAATGTGTGTCATTTCCGCC-G-GGATCAGATGCTATTCTGCAGGAGTTATT 375
||||||| ||||||||||||||||| || | || | | | ||| ||||||| || |||||
Sbjct 520 AGAAGCTCAAATGTGTGTCATTTCCACCAGAGGCT-A-AAGCTGTTCTGCACGACTTATT 577
Query 376 TACTCACTACCCACCTTGTGACGGAGATACCGCTGCAACAT--C-GTTTAACA-AGTACT 431
||||| ||| |||||||||||||| ||||| | | |||| | | | | | | ||||
Sbjct 578 TACTCGCTATCCACCTTGTGACGGCGATACTACAGGGACATCACTGGGT-ATATA-TACT 635
Query 432 -CTGGTAACAAGGGTAAACAAGGACAATGGAAAGATGATTTTTTCCGGAAACCACAGATT 490
| || | || || ||| || | | |||||||||||||| ||| |||||| || ||
Sbjct 636 AC-GG-GA-AA-CGTCAAC-AGTA-ATTGGAAAGATGATTTCTTCAAGAAACCTCATATG 689
Query 491 AGCAATGAGGA-GATTCTTG-AAA-AA-GTGGCATCTTTGAGTTCTAGACTTAAAAAGGA 546
| ||| | | || | ||| ||| || |||| |||| ||||||||||||| ||||| |
Sbjct 690 A-CAA--AACACGA-TATTGAAAATAACGTGGTATCTCTGAGTTCTAGACTGAAAAA--A 743
Query 547 TAAAG-C-TCTTAAG-GAGATCTCT-AAGCTGCGGTCGAAGCTTCCCATCACATCCTATA 602
|||| | | || | ||||||| | |||| || || |||||||||||| |||| | |
Sbjct 744 GAAAGACAT-TTTCGAGAGATCTTTGAAGC-ACGATCAAAGCTTCCCATCGCATCTTTTC 801
Query 603 AAGACGCAATCACATCTGCAGTGGAATCCAATCAGGTTATTCTCATTTCTGGTGAAACTG 662
|| || || | ||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 802 GCGATGCCATTATATCTGCAGTGGAATCCAATCAGGTTGTTCTTATTGCTGGTGAAACTG 861
Query 663 GTTGCGGGAAAACTACTCAGGTGCCTCAATATCTTTTAGACCATATGTGGTCA-AGCAA- 720
|||| |||||||||||||||||||||||||||||| |||| ||||||||| || || ||
Sbjct 862 GTTGTGGGAAAACTACTCAGGTGCCTCAATATCTTCTAGATCATATGTGG-CATAGTAAG 920
Query 721 AAGAGAAACTTGCAAAATTGTTTGCACCCAACCTCGTCGGATATCCGCCATGTCAGTTTC 780
|| |||| | |||||||| ||||||||||||| ||||| || || || || ||||||||
Sbjct 921 AA-AGAAGCATGCAAAATCATTTGCACCCAACCACGTCGTATCTCAGCTATTTCAGTTTC 979
Query 781 TGAAAGAATATCTTGTGAAAGAGGTGAAAGC-ATTGGAGAAAACAT-T-GGTTACAAGGT 837
||| |||||||||| ||||||||||||| | ||||| || ||| | | || ||||||||
Sbjct 980 TGATCGAATATCTTGGGAAAGAGGTGAAA-CTATTGG-GAGAAC-TGTCGGCTACAAGGT 1036
Query 838 TCGACTCCAAAGCAAAGGTGGAAG-GCACTCATCAGTTGTTTTCTGCACGAATGGCATTC 896
||| || ||||| |||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 1037 TCGGCTGCAAAGTGAAGGTGGAAGAG-AGTCATCAGTTGTTTTCTGCACGAATGGCATTC 1095
Query 897 TCCTGAGGGTGCTTGTAGGAAAAGGCTCTGTTAGCAG-TGT-TTCC-GACATAACTCACA 953
| ||||||||||| |||| ||||| | |||| ||| | | |||| || ||||||||||
Sbjct 1096 TATTGAGGGTGCTTATAGGCAAAGG--C-GTTAACAGCTCTGTTCCTGATATAACTCACA 1152
Query 954 TCATTGTGGATGAAATCCATGAAAGAGATTGCTATTCTGATTTCATGTTGGCAATAATAA 1013
| |||||||| |||||||||||||| || | ||| |||||||||||||| || |||
Sbjct 1153 TTATTGTGGACGAAATCCATGAAAGGGACTCCTACTCTGATTTCATGTTAATGATTTTAA 1212
Query 1014 GGGATTTACTTCCATCAAATCCTCATCTCCGTTTGATTCTCATGAGTGCTACACTTGATG 1073
|||| || ||||| || |||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 1213 GGGACTTGCTTCCGTCTAATCCTCATCTCCGACTGATTCTGATGAGTGCTACTCTTGATG 1272
Query 1074 CTGAGAGATTTTCGGGATATTTTGGAGGTTGCCCGGTTGTCCGTGTCCCTGGATTCACTT 1133
||||||| ||||| | ||||||||||||||| || |||||||| || |||||||||||||
Sbjct 1273 CTGAGAGGTTTTCTGAATATTTTGGAGGTTGTCCAGTTGTCCGAGTACCTGGATTCACTT 1332
Query 1134 ATCCAGTGAGAACCTTATATT-TGGAGGATGTGCTCTCTATTCTGAAATCAGGTGGAG-A 1191
|||||||||||||||| | || |||| |||| ||||||| | ||||| ||| | || |
Sbjct 1333 ATCCAGTGAGAACCTT-TTTTCTGGATGATGCGCTCTCTGTCCTGAATTCA-GACAAGAA 1390
Query 1192 TAATCATCTAAGCTCTGCCAACTTGAGTATACCAGACCACAAGCTTGATTTGACGGATGA 1251
|| |||||| | || | | || | | || | || | |||||| | |||||
Sbjct 1391 TAGTCATCT-A-CT-T----TC-TG-CTGT--CA-A--AC--G--TGATTTTAAAGATGA 1432
Query 1252 AGATAAACTTGCTTTAGATGAAGCAATC-ATCTTGGCTTGGACAAATGACGAGTTTGATA 1310
||||||| || |||| |||||||||||| | |||||| ||||||||||| |||||||||
Sbjct 1433 AGATAAAGTTTCTTTGGATGAAGCAATCGA-CTTGGCATGGACAAATGATGAGTTTGATT 1491
Query 1311 CCCTCTTAGATCTAGTTTCTTCTAG-AGGAAGTCATGA-GATCTACAATTATCAGCAC-C 1367
||| ||||||||||||| ||| | |||||||||||| | | |||||||| ||| || |
Sbjct 1492 GTCTCGTAGATCTAGTTTCATCT-GAAGGAAGTCATGAGGCT-TACAATTACCAGAACTC 1549
Query 1368 AATCAACCTGG-CTAACACCACTAATGGTCTTTGCTGGAAAGGGCAGGATCAGTGATGTC 1426
|| | | | || ||||||||||| |||||||||||||||||||||||| | || ||||||
Sbjct 1550 AA-CGA-CAGGCCTAACACCACTTATGGTCTTTGCTGGAAAGGGCAGGGTTAGCGATGTC 1607
Query 1427 TGCATGCTCCTATCATTTGGTGCGGACTGGA-ACTTAAAGTCTAAAGATGGTATGACTGC 1485
|| | |||||| ||| | || || ||||| | || | ||||| ||||| ||||| || ||
Sbjct 1608 TGTAAGCTCCTTTCAGTCGGCGCTGACTGTACAC-TGAAGTCCAAAGAAGGTATAACAGC 1666
Query 1486 ATTAGAATTGGCTGAAACA-GAGAATCAACTAGAAGCTGCTCAAATAATCAGGGAGCATG 1544
||||||||| ||||||| | ||||||||| | ||| ||||||||||||||||||| ||||
Sbjct 1667 ATTAGAATTAGCTGAAA-AGGAGAATCAATTTGAAACTGCTCAAATAATCAGGGAACATG 1725
Query 1545 CAGACAATTTCCAGTCTAATTCTCAGCAAGGACAACAGTTACTTGATAAATACATGGCGA 1604
| | || ||||||| ||||||||||||| |||| | ||||||||||| || |||||||
Sbjct 1726 CGGGTAACATCCAGTCCAATTCTCAGCAAGCACAAGACTTACTTGATAAGTATATGGCGA 1785
Query 1605 CAATCAACCCAG-AGCAGGTCGATGTGAGTCTTATACAGCAGTTAATGAGGAAAATATGT 1663
||||||| |||| || | || |||||| |||||||| | ||||||||| |||||||||
Sbjct 1786 CAATCAAACCAGAAG-AAGTAGATGTGGGTCTTATAGTGAAGTTAATGAAGAAAATATGC 1844
Query 1664 GGCGATTCAGAAGATGGTGCCATTCTTGTTTTTCTACCTGGATGGGATGATATAAATAAA 1723
|||||||| ||||||||||||||||||||||||||||||| ||||| || |||| |||
Sbjct 1845 AGCGATTCAAAAGATGGTGCCATTCTTGTTTTTCTACCTGGGTGGGAGGAAATAAGCAAA 1904
Query 1724 ACAAGACAGAGATTACTTGAT-AACCCTTTCTTCGCAGATAGTGCTAAATTCGA-CATTA 1781
|||| | ||| ||| |||||| | | ||| || ||| |||||||||||||| | ||||
Sbjct 1905 ACAAAAGAGAAATTGCTTGATGATCGGTTT-TTTGCACATAGTGCTAAATTC-ATCATTC 1962
Query 1782 TATGTCTTCACTCAATGGTTCCAGCAGGGGAACAGAAGAAAGTTTTTAATCGCCCCCCTC 1841
||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1963 TATGTCTTCACTCAAGGGTTCCAGCTGAGGAACAGAAGAAAGTTTTTAATCGCCCCCCTC 2022
Query 1842 GAGGTTGTCGTAAAATCGTGCTTGCGACAAATATTGCTGAATCAGCAGTTACCATTGATG 1901
| |||||||| ||||| || ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2023 GTGGTTGTCGCAAAATTGTACTTGCAACAAATATTGCTGAATCAGCAGTTACCATCGATG 2082
Query 1902 ATGTGGTTTATGTGATAGATAGTGGCCGGATGAAGGAAAAGAGCTATGATCCTTATAATA 1961
||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 2083 ATGTGGTTTATGTGATAGATAGTGGTCGGATGAAGGAAAAGAGTTATGATCCCTATAATG 2142
Query 1962 ATGTTTCAACTCTCCAATCTTCTTGGGTATCAAAAGCAAATGCAAAACAGCGTG-AGGGT 2020
| || ||||| ||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 2143 ACGTGTCAACGCTCCAATCTTCTTGGGTATCAAAAGCAAATGCAAAACAGAGGGCAGGC- 2201
Query 2021 CGAGCAGGCCGCTGCCAACCTGGCATTTGTTATCATCTCTATTCTAGACTTCGGGCAGCC 2080
||||||||||| |||||| ||||||| ||||||||||| ||||||| ||| ||||||||
Sbjct 2202 CGAGCAGGCCGTTGCCAAGCTGGCATCTGTTATCATCTATATTCTAAACTCCGGGCAGCG 2261
Query 2081 TCTATGCCAGATTTTAAAGTTCCTGAAATCAAGAGGATGCCGGTAGAAGAACTCTGCTTA 2140
||| |||| || | || |||||||||| | | ||| ||||| || || |||||||||||
Sbjct 2262 TCTTTGCCCGAATATAGAGTTCCTGAAGTTATGAGAATGCCAGTGGATGAACTCTGCTTG 2321
Query 2141 CAGGTTAAGATACTTGATCCAAATTGTAAAACAAATGATTTCCTTCAGAAATTGTTGGAC 2200
||||||||||| || ||||| ||||| || |||||||||||||||||||||| |||||
Sbjct 2322 CAGGTTAAGATGCTGGATCCGAATTGCAACGTAAATGATTTCCTTCAGAAATTGATGGAC 2381
Query 2201 CCGCCTGTTGATCAAAGTATTGCAAACGCCTTAAGCATACT-ACAGGATATCGGGGCCCT 2259
|||||||||| ||||||||||| ||| || |||| ||| || | || |||| || || |
Sbjct 2382 CCGCCTGTTGCTCAAAGTATTGAAAATGCATTAATCATCCTTAAAG-ATATTGGAGCTTT 2440
Query 2260 GACACCTCAGGAAGAGCTGACAGAACTTGGAGAGAAATTTGGTCATCTCCCAGTTCATCC 2319
||| ||| | ||||||||||| ||||||||| ||||||||||||| || |||||||||||
Sbjct 2441 GACTCCTGAAGAAGAGCTGACTGAACTTGGACAGAAATTTGGTCAGCTTCCAGTTCATCC 2500
Query 2320 TCTGATTAGCAAAATGCTTT-TCTTCGCTGTATTAGTAAACTGTCTGGATCCAGCACTTA 2378
|| ||||||||| ||| ||| | ||||| ||||||| |||||| |||||||||||||||
Sbjct 2501 TCGGATTAGCAAGATGATTTAT-TTCGCCATATTAGTGAACTGTTTGGATCCAGCACTTA 2559
Query 2379 CTCTGGCATGTGCAGCGGACTACAAGGAACCATTTACTATGCC-TATGTCGCCAGGTGAA 2437
||||||||||||||| ||| | ||||| || ||||| ||||| | |||||||||||||
Sbjct 2560 TTCTGGCATGTGCAGCTGACGAGAAGGATCCGTTTACCATGCCCT-TGTCGCCAGGTGAT 2618
Query 2438 AGACAGAAAG-CTGCTGCTGCAAAACTTGAACTTGCATCACTTTGTGGAGGTGACAGTGA 2496
||| | |||| ||||||| ||||||| |||||||||||| |||| ||||| |||||||
Sbjct 2619 AGAAA-AAAGGCTGCTGCCGCAAAACATGAACTTGCATCGCTTTATGGAGACCACAGTGA 2677
Query 2497 TCACCTTGC-AGTTGTTGCTGCCTTTGAGTGCTGGAAAAACGCAAAAGAAAGAGGTCTTT 2555
||| ||||| | | || || || ||| ||||||||||||| ||||||| ||| ||||
Sbjct 2678 TCATCTTGCCACT-GTCGCGGCTTTTCAGTGCTGGAAAAATGCAAAAGCAAGTGGTCAAG 2736
Query 2556 CGGCAG-AGTTTTGCTCTCAGTACTTTGTCTCTCCAAGT-G-CTATGAAGATGTTGGATC 2612
| || ||||||| ||| ||||||| |||| |||||| | | ||||||| | |||||
Sbjct 2737 CTA-AGGAGTTTTGTTCTAAGTACTTCATCTC-CCAAGTTGTC-ATGAAGAGGCTGGATG 2793
Query 2613 AAATGCGTAGCCAA-CTTGAGTCG-GAACTTAAAAGACATGGGATTATTCCTAAC-GACA 2669
| || || || || ||| || | |||||||| ||||||||| | || |||| | | ||
Sbjct 2794 ATCTGTGTCGC-AAGCTTCAGG-GAGAACTTAATAGACATGGGGTCATACCTAGCAG-CA 2850
Query 2670 TTTCTAGTTGTAGCCAAAATTCGCGTGATCCTGGTATACTCCGTGCTGTGCTAGCAGTAG 2729
|| | ||||||| ||| | | |||||| ||||| ||||||||||| ||||||| |
Sbjct 2851 GCTCAAACTGTAGCCTGAATGCTCATGATCCGGGTATTCTCCGTGCTGTTATAGCAGTTG 2910
Query 2730 GATTGTATCCTATGGTGGGAAG-ATTGTGCCCAGCTTTTGGTAATAATCGAAGAA---CT 2785
||||||| |||||| ||||||| || ||||||| |||| || ||||| | || ||
Sbjct 2911 GATTGTACCCTATGTTGGGAAGGAT-GTGCCCA-CTTTCC--AAGAATCGGACAAGGTCT 2966
Query 2786 ATAGTAGAAACTGCTAG-TGGTGCCAAAGTCCGTGTGCATTCGCTGTCAAACAAC-TTCA 2843
|| |||| ||| | | ||| |||||||||||||||| ||||| |||||||| || |
Sbjct 2967 GTAATAGAGACTATT-GCTGGAGCCAAAGTCCGTGTGCCCTCGCTATCAAACAATGTTGA 3025
Query 2844 ACTTGTCGTCTAAAAAGTATGATAAATCTTTAGTTGTTTTCGATGAGATCACTCGTGGAG 2903
| |||| |||| |||| ||| || ||||| ||||||| |||||||||||||| ||||
Sbjct 3026 -CATGTCCTCTACCAAGTTTGACGAAGCTTTAATTGTTTTTGATGAGATCACTCGAGGAG 3084
Query 2904 AT-GGAGGCATGCACATAAGAAACTGTACTGTTGCT-CGTGATCT-T-CCTTTGTTACTT 2959
|| || || || ||||| | ||| |||||| || | | || | ||| |||||||
Sbjct 3085 ATTGG-GGTGTGGTGATAAGGAGCTGCACTGTT-CTTCCC-A-CTATACCTGTGTTACT- 3139
Query 2960 GTCT-CAACAGAGATAGCTGTGGCTCCTACAGGGAGC-AGTGATTCTGATGATAGTGATg 3017
|| | ||| ||||||||| || || |||||| |||| | |||| ||| | | |||||||
Sbjct 3140 GTTTTCAAGAGAGATAGCCGTTTCTACTACAGAGAGCTA-TGATGCTGTTAAGAGTGATG 3198
Query 3018 aagaagaagaagatgaagaagaagTAGGAGCTAATACTAATGAAGACA-GAATGGACATA 3076
| || | ||||| | || | |||||| ||| || || ||| || ||||||||
Sbjct 3199 ACGA-G--GAAGACCAC-AA-A-GTAGGA---AATG-TAG-GA-GACGCGA-TGGACATA 3245
Query 3077 CATAAAGAAGA-GAGTAGGCGTGGAGCGAAAATGATGTCTTCA-CCTGAAAATTCAGTCA 3134
||||||||| | |||||| ||||| |||||| ||| ||| || ||||||||||| |
Sbjct 3246 GATAAAGAAGTTG-GTAGGCCTGGAGAGAAAATAATG-CTTGGGCCGGAAAATTCAGTAA 3303
Query 3135 AATTGGTAGTTGATCGCTGGCTGCCTTTCA-GAACCACAGCCCTTGAAGTTGCTCAAATG 3193
|| | ||||| ||||| ||||||||||||| | ||||| ||||| |||||||||||
Sbjct 3304 AAGTAGTAGTGGATCGGTGGCTGCCTTTCAAGGTT-ACAGCTTTTGAAATTGCTCAAATG 3362
Query 3194 TACATTTTGCGGGAAAGACTAATGGCGTCTATTTTATTCAAGGT-AACACATCCACGGGA 3252
||||| ||| | || |||||||||||||| ||||| |||||||| || ||||||| |||
Sbjct 3363 TACATCTTGAGAGAGAGACTAATGGCGTCCATTTTGTTCAAGGTTAA-ACATCCAAAGGA 3421
Query 3253 ACATTTGCCGCCTCATCTCGGAGCTTCTATGCATGCAATAGCTGGTATTCTCTCATATGA 3312
| ||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||||
Sbjct 3422 AAATTTGCCGCCTCATCTCGGTGCTTCTATGTATGCAATAGCTTCTGTTCTCTCATATGA 3481
Query 3313 T 3313
|
Sbjct 3482 T 3482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 196554082674
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5