BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933614
Length=346
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60600.1 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | 4-hydroxy-... 268 2e-71
> AT5G60600.1 | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | 4-hydroxy-3-methylbut-2-enyl
diphosphate synthase | chr5:24358966-24363485
FORWARD LENGTH=2650
Length=2650
Score = 268 bits (145), Expect = 2e-71
Identities = 209/237 (88%), Gaps = 16/237 (7%)
Strand=Plus/Plus
Query 72 CAGTTACTTTGTTTCACTGAGAAAAATGGCGACTGGAGTATTGCCAGCTCCTGTTTCCGG 131
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 189 CAGTTACTTTGATTCACTGAGAAAAATGGCGACTGGAGTATTGCCAGCTCCGGTTTCTGG 248
Query 132 G-----G-T------T-CGAAACTCGGGTTCGGTAAAAGTATGAATCTTGTGAGAATTTG 178
| | | | ||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct 249 GATCAAGATACCGGATTCGAAAGTCGGGTTTGGTAAAAGCATGAATCTTGTGAGAATTTG 308
Query 179 TGAT-TTGACGAGTCTAAGATCTGCTAGAAGAAGAGTTTCCGTTATCCGGAATTCAAACC 237
|||| || | |||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 309 TGATGTT-AGGAGTCTAAGATCTGCTAGGAGAAGAGTTTCGGTTATCCGGAATTCAAACC 367
Query 238 AAGGCTCCGATTTAGCCGAGCTTCAACCTGCATCAGAAGGAAGCCCTCTCTTA-TGC 293
||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 368 AAGGCTCTGATTTAGCTGAGCTTCAACCTGCATCCGAAGGAAGCCCTCTCTTAGTGC 424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16186215178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5