BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933646

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31090.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   462    6e-130


> AT2G31090.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant 
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT2G20562.1); 
Has 70 Blast hits to 70 proteins in 13 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13256138-13256711 
FORWARD LENGTH=488
Length=488

 Score =  462 bits (250),  Expect = 6e-130
 Identities = 262/268 (98%), Gaps = 0/268 (0%)
 Strand=Plus/Plus

Query  1    AACTCGCCGCCGGAGCCACCATGTGCGACGGAGATTGCCGtcctctcggtttcctcttag  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  125  AACTCGCCGCCGGAGCCACCATGTGCGACGGAGATTGCCGTCCTCTCGGTTTCCTCTTAG  184

Query  61   gtcttcccttcgccttcctctctcttcttctctccATCATCGGTGTCGTTATCTGGATCG  120
            ||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||
Sbjct  185  GTCTTCCTTTCGCCTTCCTTTCTCTCCTTCTCTCCATCATCGGTGTCATTATCTGGATCG  244

Query  121  TCGGATTGTTGTTATCATGCATATGTCCTTGTTGCTTGTGTGTGACTGTACTAGTGGAGA  180
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  245  TCGGATTGTTGTTATCATGCATATGTCCATGTTGCTTGTGTGTGACTGTACTAGTGGAGA  304

Query  181  TCGCAATTGGTTTGATTAAAGCCCCAATTCATGTTATGGAGTGGTTCATGTCCAAGATCC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  305  TCGCAATTGGTTTGATTAAAGCCCCAATTCATGTTATGGAGTGGTTCATGTCCAAGATCC  364

Query  241  CTTGTTGAGAtcttcttcttcttcttct  268
            |||||||||||||||| |||||||||||
Sbjct  365  CTTGTTGAGATCTTCTCCTTCTTCTTCT  392



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12265330756


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5