BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933650
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26720.1 | Symbols: | Cupredoxin superfamily protein | chr2... 544 5e-154
AT2G31050.1 | Symbols: | Cupredoxin superfamily protein | chr2... 387 9e-107
> AT2G26720.1 | Symbols: | Cupredoxin superfamily protein | chr2:11384782-11385402
FORWARD LENGTH=621
Length=621
Score = 544 bits (294), Expect = 5e-154
Identities = 390/436 (89%), Gaps = 7/436 (2%)
Strand=Plus/Plus
Query 22 ATGGCTTTGATTAAGAACAACGTCGTCTTTTTCACTTCATTGTTGATTCTTGTAACTCTT 81
|||||||||||||||||||| | ||||||||||||| ||| ||||| |||| ||||||
Sbjct 1 ATGGCTTTGATTAAGAACAA---CATCTTTTTCACTTCTTTGCTGATTTTTGTGACTCTT 57
Query 82 TTAGGTGTTACCGTTGGAGGAACCGTTCACAAAGTCGGTGACACTAAAGGGTGGACGATG 141
|| || ||| |||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct 58 TTTGGAGTTGCCGTTGGAGGAACCGTTCACAAAGTCGGCAACACGAAAGGATGGACGATG 117
Query 142 GCGGGAGTCGATTACGAGGATTGGGCTTCTTCAAAAACTTTTCAAGTGGGAGATTCTTTG 201
|||| |||||| |||| |||||||||||||| | ||||||||| ||||| || ||
Sbjct 118 ATTGGAGGCGATTATGAGGCTTGGGCTTCTTCAAGAGTTTTTCAAGTCGGAGACACTCTG 177
Query 202 GTCTTCGCATACAACAAAGATTTCCACGACGTCACGGAAGTCACTCACAATGATTTCGAG 261
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 GTCTTCGCATACAACAAAGATTACCACGACGTCACGGAAGTCACTCACAATGATTTCGAG 237
Query 262 CTGTGTGAATCGTCTAAACCACTTAA-GAGATACAAAACCGGGTCCGACTCAATCAGTCT 320
||||||||||||||||||| | ||| ||||||||| |||||||| ||||||||||||||
Sbjct 238 ATGTGTGAATCGTCTAAACCGC-TAAGGAGATACAAGACCGGGTCTGACTCAATCAGTCT 296
Query 321 AACCAAACCGGGACTCCAACACTTCATATGCGGAGTTCCTGGTCATTGCAACATAGGG-C 379
|||||||||||||||||||||||||||||||||||||||||| || ||||| | |||| |
Sbjct 297 AACCAAACCGGGACTCCAACACTTCATATGCGGAGTTCCTGGACACTGCAAGA-AGGGAC 355
Query 380 AAAAGCTTCTAATCCATGTCTTACCGGCTTCGTTGGGTCCCGTCGCTGCTCCGGTTCCTG 439
||||||||| |||||||||||||||||| || ||||||| |||||||| |||||||||||
Sbjct 356 AAAAGCTTCAAATCCATGTCTTACCGGCCTCATTGGGTCACGTCGCTGTTCCGGTTCCTG 415
Query 440 GACCTGTCCGATCACA 455
|||| |||||||||||
Sbjct 416 GACCGGTCCGATCACA 431
> AT2G31050.1 | Symbols: | Cupredoxin superfamily protein | chr2:13212150-13212752
FORWARD LENGTH=603
Length=603
Score = 387 bits (209), Expect = 9e-107
Identities = 367/441 (83%), Gaps = 19/441 (4%)
Strand=Plus/Plus
Query 22 ATGGCTTTGATTAAGAA-CAACGTCGTCTT-TTTCACTTCATTG-TTGATTCTTGTAACT 78
||||||||||| || || ||||| | ||| ||| ||||| ||| || ||||||||| |
Sbjct 1 ATGGCTTTGATCAA-AAGCAACG-C--CTTCTTT-ACTTCTTTGCTT-ATTCTTGTAGCA 54
Query 79 CTTTTAGGTGTTACCGTTGGAGGAACCGTTCACAAAGTCGGTGACACTAAAGGGTGGACG 138
||||| || || ||||||||||||||||||||||||| |||||| | | || ||||||
Sbjct 55 CTTTTTGGAATTTCCGTTGGAGGAACCGTTCACAAAGTTGGTGACTCCGACGGATGGACG 114
Query 139 ATGGCGGGAGTCGATTACGAGGA-TTGGGCTTCTTCAAAAACTTTTCAAGTGGGAGATTC 197
|| | | ||| | ||||| || ||||| ||| ||| |||||||||||| ||||| ||
Sbjct 115 ATTATGAGCGTCAACTACGA-GACATGGGCATCTACAATAACTTTTCAAGTTGGAGACTC 173
Query 198 TTTGGTCTTCGCATACAACAAAGATTTCCACGACGTCACGGAAGTCACTCACAATGATTT 257
|||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 174 TTTGGTCTTCAAATACAACAAAGACTTCCACGACGTCACCGAAGTCACTCACAATGATTA 233
Query 258 CGAGCTGTGTGAATCGTCTAAACCACTTAAG--AGATACAAAACCGGGTCCGA-CTCAAT 314
|||| |||||||| |||| ||||| | | || |||||| | |||||||| || || |
Sbjct 234 CGAGATGTGTGAACCGTCCAAACCGC-T-AGCAAGATACGAGACCGGGTCTGATATC-GT 290
Query 315 CAGTCTAACCAAACCGGGACTCCAACACTTCATATGCGGAGTTCCTGGTCATTGCAACAT 374
|| ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||
Sbjct 291 CATTCTAACCAAACCGGGACTCCAACACTTCATATGCGGATTTCCTGGTCACTGTGACAT 350
Query 375 AGGG-CAAAAGCTTCTAATCCATGTCTTACCGGCTTCGTTGGGTCCCGTCGCTGCTCCGG 433
||| |||||||||| ||||||||| ||||| || || ||||| || |||||||||||||
Sbjct 351 -GGGACAAAAGCTTCAAATCCATGTATTACCAGCCTCATTGGGACCTGTCGCTGCTCCGG 409
Query 434 TTCCTGGACCTGTCCGATCAC 454
|||||||||| |||||| |||
Sbjct 410 TTCCTGGACCCGTCCGACCAC 430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29035336966
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5