BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933658
Length=481
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31200.1 | Symbols: ADF6, ATADF6 | actin depolymerizing fact... 713 0.0
> AT2G31200.1 | Symbols: ADF6, ATADF6 | actin depolymerizing factor
6 | chr2:13293986-13295410 FORWARD LENGTH=1088
Length=1088
Score = 713 bits (386), Expect = 0.0
Identities = 441/468 (94%), Gaps = 1/468 (0%)
Strand=Plus/Plus
Query 10 AGAA-CAAATCAATGTCTTTCAGAGGACTTAGCAGGCCAAATGCAACATCTGGAATGGGT 68
|||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 174 AGAATCAAATCCATGTCTTTCAGAGGACTTAGCAGGCCAAATGCAATATCTGGAATGGGT 233
Query 69 GTTGCAGATCAAAGCAAAACCACATATCTTGAGCTTCAAAGGaaaaaaaCTCATCGCTAT 128
||||||||| | ||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 234 GTTGCAGATGAGAGCAAAACCACATTTCTAGAGCTTCAAAGGAAAAAAACTCATCGCTAT 293
Query 129 GTGGTCTTCAAGATCGATGAATCCAACAAACAAGTTGTTGTTGAGAAAACTGGAAACCCT 188
|||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct 294 GTGGTCTTCAAGATTGATGAATCCAAAAAAGAAGTTGTTGTTGAGAAAACTGGAAATCCT 353
Query 189 GCTGAGAGCTACGATGATTTCTTAGCTTCTCTACCCGAAAATGACTGCAGATACGCTGTT 248
| |||||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 354 ACAGAGAGCTACGATGATTTCTTAGCTTCACTTCCTGATAATGACTGCAGATACGCTGTT 413
Query 249 TATGACTTCGATTTCGTTACTTCTGAGAATTGTCAAAAGAGCAAAATCTTCTTCTTTGCT 308
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TATGACTTTGATTTCGTTACTTCTGAGAATTGTCAAAAGAGCAAAATCTTCTTCTTTGCT 473
Query 309 TGGTCTCCTTCGACTTCTCGAATTCGGGCAAAGGTGCTTTACTCGACTTCTAAAGACCAG 368
|||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 474 TGGTCTCCTTCGACCTCTGGAATTCGAGCCAAGGTGCTTTACTCGACTTCTAAAGACCAG 533
Query 369 TTTAGGAGGGAGCTTCAAGGGATTCACTATGAGATTCAAGCTACTGATCCTACTGAGGTT 428
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTAAGTAGGGAGCTTCAAGGGATTCACTATGAGATTCAAGCTACTGATCCTACTGAGGTT 593
Query 429 GATCTTGAAGTGTTACGCGAACGAGCTAACTGAGAGCAAACAAAATTG 476
|||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 594 GATCTTGAAGTGTTACGCGAACGAGCGAACTGAGAGCAAGCAAGATTG 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22906771032
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5