BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933660

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31215.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bin...   340    7e-93
  AT2G31220.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bin...   231    4e-60


> AT2G31215.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding 
superfamily protein | chr2:13299807-13300302 FORWARD 
LENGTH=390
Length=390

 Score =  340 bits (184),  Expect = 7e-93
 Identities = 258/292 (88%), Gaps = 11/292 (4%)
 Strand=Plus/Plus

Query  87   AAGGAAGAGGATC-AAGAAAGTCGAGAACTTTCCCTACAGAACGCGAAAGACGAGTTCAC  145
            |||||| |||||| ||| |||||||||||||||| |||||||||||||||||||| || |
Sbjct  44   AAGGAAAAGGATCAAAG-AAGTCGAGAACTTTCCTTACAGAACGCGAAAGACGAGCTCTC  102

Query  146  TTCAATGACCGTATCTTCGAGTTAAAGAACCTCATTCCAAATCCCACAAAGGGAGGTAAA  205
            |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct  103  TTCAATGACCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGGGAGGTGAA  162

Query  206  GCATCCATTGTTCAAGATGGGATCGTTTACATCAACGAGTTACGCAGACTAGTTAGCGAG  265
            |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct  163  GCATCCATTGTTCAAGATGGGATCGTTTACATCAACGAGTTACAAAGACTAGTTAGCGAG  222

Query  266  CTTAAGTCTTTGGTTGAGAAGAAGAGATGTGGTGGAAGACACAAGAATATTGACAGTAGA  325
            ||||||| ||||||||||||||| | ||| |||| ||| ||||| || ||||| ||||||
Sbjct  223  CTTAAGTATTTGGTTGAGAAGAAAAAATGCGGTGCAAGGCACAACAACATTGA-AGTAGA  281

Query  326  -AACA----CA--ATTTATGTGACTGGCGAGATAGAGCATCCGTTTTC-AAA  369
             || |    ||  ||||||| |||| || ||||||||||||| || || |||
Sbjct  282  CAATAAAAACACGATTTATGGGACTAGCAAGATAGAGCATCCATTCTCCAAA  333


> AT2G31220.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding 
superfamily protein | chr2:13302681-13304869 FORWARD 
LENGTH=1697
Length=1697

 Score =  231 bits (125),  Expect = 4e-60
 Identities = 203/239 (85%), Gaps = 12/239 (5%)
 Strand=Plus/Plus

Query  65    TTTAACAATGGAGTTACTCGTAAAGGAAGAGGATCAAGAAAGTCGAGAACTTTCCCTACA  124
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  806   TTTAACAATGGAGTTACTCGTAAAGGAAGAGGATCAAGAAAGTCGAGAACTTCCCCTACA  865

Query  125   GAACGCGAAAGACGAGTTCACTTCAATGACCGTATCTTCGAGTTAAAGAACCTCATTCCA  184
             ||||| || |||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct  866   GAACGTGAGAGACGAGTTCACTTCAATGATCGTTTCTTCGACTTAAAGAACCTCATTCCA  925

Query  185   AATCCCACAAAGGGAGGTAAAGCATCCATTGTTCAAGATGG-GATCGTTTACATCAACGA  243
             ||||||||||||   | || |||||| || |||  ||| || ||| | ||||||||| ||
Sbjct  926   AATCCCACAAAGATTGATAGAGCATCGATAGTTGGAGA-GGCGATAGATTACATCAAAGA  984

Query  244   G-TT--ACGCAGACTAGTTAGCGAGCTTAAG-T-CTTTGGTTGAGAAGAAGAGATGTGG  297
             | ||  | | | | |||  || ||| ||||| | ||| | | |||||||||||||||||
Sbjct  985   GCTTTTAAGGACAATAG--AG-GAGTTTAAGATGCTT-G-TGGAGAAGAAGAGATGTGG  1038



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27980419879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5