BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933660 Length=582 Score E Sequences producing significant alignments: (Bits) Value AT2G31215.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 340 7e-93 AT2G31220.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 231 4e-60 > AT2G31215.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:13299807-13300302 FORWARD LENGTH=390 Length=390 Score = 340 bits (184), Expect = 7e-93 Identities = 258/292 (88%), Gaps = 11/292 (4%) Strand=Plus/Plus Query 87 AAGGAAGAGGATC-AAGAAAGTCGAGAACTTTCCCTACAGAACGCGAAAGACGAGTTCAC 145 |||||| |||||| ||| |||||||||||||||| |||||||||||||||||||| || | Sbjct 44 AAGGAAAAGGATCAAAG-AAGTCGAGAACTTTCCTTACAGAACGCGAAAGACGAGCTCTC 102 Query 146 TTCAATGACCGTATCTTCGAGTTAAAGAACCTCATTCCAAATCCCACAAAGGGAGGTAAA 205 |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 103 TTCAATGACCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGGGAGGTGAA 162 Query 206 GCATCCATTGTTCAAGATGGGATCGTTTACATCAACGAGTTACGCAGACTAGTTAGCGAG 265 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 163 GCATCCATTGTTCAAGATGGGATCGTTTACATCAACGAGTTACAAAGACTAGTTAGCGAG 222 Query 266 CTTAAGTCTTTGGTTGAGAAGAAGAGATGTGGTGGAAGACACAAGAATATTGACAGTAGA 325 ||||||| ||||||||||||||| | ||| |||| ||| ||||| || ||||| |||||| Sbjct 223 CTTAAGTATTTGGTTGAGAAGAAAAAATGCGGTGCAAGGCACAACAACATTGA-AGTAGA 281 Query 326 -AACA----CA--ATTTATGTGACTGGCGAGATAGAGCATCCGTTTTC-AAA 369 || | || ||||||| |||| || ||||||||||||| || || ||| Sbjct 282 CAATAAAAACACGATTTATGGGACTAGCAAGATAGAGCATCCATTCTCCAAA 333 > AT2G31220.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:13302681-13304869 FORWARD LENGTH=1697 Length=1697 Score = 231 bits (125), Expect = 4e-60 Identities = 203/239 (85%), Gaps = 12/239 (5%) Strand=Plus/Plus Query 65 TTTAACAATGGAGTTACTCGTAAAGGAAGAGGATCAAGAAAGTCGAGAACTTTCCCTACA 124 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 806 TTTAACAATGGAGTTACTCGTAAAGGAAGAGGATCAAGAAAGTCGAGAACTTCCCCTACA 865 Query 125 GAACGCGAAAGACGAGTTCACTTCAATGACCGTATCTTCGAGTTAAAGAACCTCATTCCA 184 ||||| || |||||||||||||||||||| ||| ||||||| |||||||||||||||||| Sbjct 866 GAACGTGAGAGACGAGTTCACTTCAATGATCGTTTCTTCGACTTAAAGAACCTCATTCCA 925 Query 185 AATCCCACAAAGGGAGGTAAAGCATCCATTGTTCAAGATGG-GATCGTTTACATCAACGA 243 |||||||||||| | || |||||| || ||| ||| || ||| | ||||||||| || Sbjct 926 AATCCCACAAAGATTGATAGAGCATCGATAGTTGGAGA-GGCGATAGATTACATCAAAGA 984 Query 244 G-TT--ACGCAGACTAGTTAGCGAGCTTAAG-T-CTTTGGTTGAGAAGAAGAGATGTGG 297 | || | | | | ||| || ||| ||||| | ||| | | ||||||||||||||||| Sbjct 985 GCTTTTAAGGACAATAG--AG-GAGTTTAAGATGCTT-G-TGGAGAAGAAGAGATGTGG 1038 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27980419879 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5