BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933670
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31270.1 | Symbols: ATCDT1A, CDT1A, CDT1 | homolog of yeast ... 806 0.0
> AT2G31270.1 | Symbols: ATCDT1A, CDT1A, CDT1 | homolog of yeast
CDT1 A | chr2:13329009-13331830 FORWARD LENGTH=2030
Length=2030
Score = 806 bits (436), Expect = 0.0
Identities = 640/736 (87%), Gaps = 23/736 (3%)
Strand=Plus/Plus
Query 687 TTCAACGCCTGCTAAAATTGACTCAACACCAGTTGTTGTTGCTTCGACTCCACCTGAATT 746
|||||| || || | ||||||||||||||| || || || | ||||||||||||||
Sbjct 1042 TTCAACACCGGCGATTATTGACTCAACACCA---GTCATTACTGCAACTCCACCTGAATT 1098
Query 747 TGCTTCAACTCCTGTCCGGCTGTTTAGTACTTCACAGGAAGCTCGCT-CGCAGAAAAGAA 805
|||||||||||||| ||||||| | |||||||| | || |||||| | ||| ||||||||
Sbjct 1099 TGCTTCAACTCCTGCCCGGCTGATGAGTACTTCTCTGGCAGCTCG-TCCGCTGAAAAGAA 1157
Query 806 GTAGTGGTTC-TACAAATCCAGATGATGTTTCTGCTGACCCACCGGTTAAGCTTGTGAGG 864
| | || || |||||||||||||||| ||||||||||||||||| |||||| ||||||
Sbjct 1158 GCAACGG-TCATACAAATCCAGATGATATTTCTGCTGACCCACCGACTAAGCTCGTGAGG 1216
Query 865 CGTTCCTTGT-TGCTGAACTTTGATTCTTGTTCTGAGGACAAGA-AAGCTATGGATGTGA 922
|||||||||| | |||||||||||||||| | ||||||| ||| || |||||||| | |
Sbjct 1217 CGTTCCTTGTCT-CTGAACTTTGATTCTTATCCTGAGGATGAGAGAA-CTATGGATTTCA 1274
Query 923 CAGTTGATCAGA-CCATTGTTCAAGTACC---AGAAGATGTATCCAGTAATGATGAAGAA 978
||| |||| | | |||||| ||||||||| ||||||||||||||| ||||| |||
Sbjct 1275 CAGATGAT-ATACCCATTGATCAAGTACCAGAAGAAGATGTATCCAG---CGATGATGAA 1330
Query 979 ATCCTCAGCATGCTTCCTGATAAGCTTCGACAAT-CGATAAAAGATCAAGAGATGAAAAC 1037
|| |||||||| ||||||||||| ||||||| || |||||||||| ||||||| |||| |
Sbjct 1331 ATACTCAGCATACTTCCTGATAAACTTCGAC-ATGCGATAAAAGAACAAGAGAGGAAAGC 1389
Query 1038 AAATGAGGATCAAAATCCAGCAATCTCACTGGCAAAGAGAAGGCGAGAGATGATCGCTTG 1097
| |||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1390 GATTGAGGATCAAAATCCAGCAATCTCTCTGGCAAAAAGAAGGCGAAAGATGATCGCTTG 1449
Query 1098 CCTACCTAAACTTTTCGATGTCATCCATTACATAATTCAGTCGATAAGGCGTTGGGTAAT 1157
||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||
Sbjct 1450 TCTACCTAAACTTTTCAATGTCATCCATTACTTAATTCAATCGATAAGGCGTTGGGTTAT 1509
Query 1158 CACAAAAGAAGAGCTTGTGCACAAGATAATTGCCGGTCATTCTGATATTACCGACAGAAA 1217
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1510 CACAAAAGAAGAGCTTGTGCACAAGATCATTGCCGGTCACTCTGATATTACTGACAGAAA 1569
Query 1218 AGAAGTTGAAGAACAACTGATCCTAATGCAAGAGCTTGTCCCGGAATGGATGTCTGAGAA 1277
||||||||||||||||| ||| || ||||||| ||||||| |||||||||||||||||
Sbjct 1570 GGAAGTTGAAGAACAACTAATCTTACTGCAAGAAATTGTCCCTGAATGGATGTCTGAGAA 1629
Query 1278 AAGATCATCAAGCGAAGAT-TTACTAGTATGCATAAACAAATTGGCATCTCCCCTAACAA 1336
|| ||||||||| | |||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct 1630 AAAATCATCAAGTGGAGATGTT-CTAGTATGCATAAACAAGTTGGCATCTCCTCTAACAA 1688
Query 1337 TTCGATCCCGTCTAGAAGAAGAAAACAAGCAAGAGATGGCTTCACCGCTTTCTTGAGATC 1396
| ||||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1689 TCCGATCACGTCTTGAAGAAGAAAACAAGCAAGAGATGGCTCCACTGCTTTCTTGAGATC 1748
Query 1397 GCGGTTCCATTGGCTG 1412
| |||||||| |||||
Sbjct 1749 GTGGTTCCATCGGCTG 1764
Score = 573 bits (310), Expect = 2e-162
Identities = 447/513 (87%), Gaps = 9/513 (2%)
Strand=Plus/Plus
Query 162 TCTGGGTAAA-TTCTTCGATGCGTTGGATAGTTCGATCCTATTATCAAAATTGAGAGGTT 220
|||||| ||| ||||| || || ||||||| |||||| | ||||| ||||| |||||||
Sbjct 379 TCTGGG-AAAGTTCTTTGAAGCATTGGATAATTCGATGTTGTTATCGAAATTAAGAGGTT 437
Query 221 CTAAGCCGACATTTTCCAACATTTC-GAAGATAATCGAGCATTTAACCCAAAGGAGTTTT 279
||||||| ||||| ||||||||||| || | |||||||||||||||| | ||||| |||
Sbjct 438 CTAAGCCAACATTCTCCAACATTTCTAAACA-AATCGAGCATTTAACCGAGAGGAGGTTT 496
Query 280 TGCTACAGTCACTTGGCTCAACTAAAGCATATATTGCCTGAAGCGATCGAGATTAAGAGA 339
|| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 497 TGTTATAGTCACTTGGCTCAAATAAAGCATATATTGCCTGAAGCGATTGAGATTAAGAGA 556
Query 340 GTATTGATACATGATGAAACAACTTGCTGTATGAAACCAGATCTTCATGTTTCACTCAAC 399
|||||||||||||||||||| ||||||||||||||||| || ||||||||| | |||||
Sbjct 557 GTATTGATACATGATGAAACTACTTGCTGTATGAAACCGGACCTTCATGTTACGCTCAAT 616
Query 400 GCCGATGCAGTTGTATACGATGACAAGTCGATATCGGAAAGTAAGAGAATCAATCTCCGG 459
|||||||| |||| |||| | |||||||||| |||||||||||||| |||| ||| |||
Sbjct 617 GCCGATGCTGTTGAATACAACGACAAGTCGAAATCGGAAAGTAAGAAAATCGCTCTTCGG 676
Query 460 AAAGTG-TTCAGGGCAAGACTTGCAGAGTTTGTTAAAACTCATCCTCAGGGTGATGAAGT 518
|||||| ||| |||| |||||||| || ||||||||| |||| |||||||||||||||||
Sbjct 677 AAAGTGTTTC-GGGCTAGACTTGCGGATTTTGTTAAAGCTCACCCTCAGGGTGATGAAGT 735
Query 519 TCCAGAGGAACCGCTTCCTGAGCTATTTAATACAAGGAAACCAAATGAAAACTCAGAA-G 577
||||||||||||||||||||||| || |||| |||||||||| |||||||||| || |
Sbjct 736 TCCAGAGGAACCGCTTCCTGAGCCCTTCAATAGAAGGAAACCAGTTGAAAACTCA-AATG 794
Query 578 TTGAGGTTGGGTGTGTTAGTTCTGTCATGGAAGAGATGGCTTCTATTCCAGTAGCTAAAT 637
|||| || | ||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 795 TTGAAGTCAAGCGTGTTAGTTCTCTCATGGAAGAGATGGCTTCTATTCCAGCATCTAAAT 854
Query 638 TGATTTCATCTCCCATCACATCGACTCCA-TCA 669
|| ||||||||||||||||||| || ||| |||
Sbjct 855 TGTTTTCATCTCCCATCACATCAACGCCAGTCA 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69577955370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5