BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933672 Length=1288 Score E Sequences producing significant alignments: (Bits) Value AT2G31290.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 2028 0.0 > AT2G31290.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr2:13343814-13346012 FORWARD LENGTH=2199 Length=2199 Score = 2028 bits (1098), Expect = 0.0 Identities = 1217/1276 (95%), Gaps = 2/1276 (0%) Strand=Plus/Plus Query 1 TTTGGTAATCAGACACTGATATGGCTATGACACGAGAGTTATAT-GGAATTCTGGGCACC 59 ||||||| ||||| |||||||||||||||||||||||||||||| || |||||||| ||| Sbjct 318 TTTGGTAGTCAGAGACTGATATGGCTATGACACGAGAGTTATATCGG-ATTCTGGGTACC 376 Query 60 AAGTATGTTCCATTGTTAATCCGAAGATTCTCACTTTGGTCTACGAAGAAAGACCCTGAT 119 ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 377 AAGTATGCTCCATTGTTAATCCGAAGATTCTCACTTTGGTCAACGAAGAAAGACCCTGAT 436 Query 120 CTCGAATCTGCTCTCTCGCGTAACAAGCGATGGATAGTTAACAGCCGGCTCAAGAACATT 179 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 437 CTCGAATCTGCTCTCTCGCGTAACAAGCGATGGATTGTTAACAGTCGGCTCAAGAACATT 496 Query 180 ATCTTAAGGTGTCCCAACCAGGTTGCATCGGTTAAGTTTCTACAGAAGAAGTTTAAGACT 239 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 497 ATCTTAAGGTGTCCCAATCAGGTTGCATCGATTAAGTTTCTACAGAAGAAGTTTAAGACT 556 Query 240 CTTGATCTACAGGGGAAAGCCTTGAATTGGCTTAAGAAGTACCCTTGTTGTTTCCACCTT 299 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 557 CTTGATCTTCAGGGGAAAGCCTTGAATTGGCTTAAGAAATACCCTTGTTGTTTCCATGTT 616 Query 300 TATCTCGAGAACGATGAGTATTACTGTCGGTTAACGAAACCGATGATGACGCTTGTGGAA 359 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 617 TATCTCGAGAACGATGAGTATTACTGTAGGTTAACGAAACCGATGATGACGCTTGTGGAA 676 Query 360 GAAGAAGAATTGGTCAAAGATACACAAGAGCCTCTGCTTGCTGATAGGCTTGCAAAGCTG 419 || ||||| |||||||||||||||||||||||| | || || |||||||||||||||||| Sbjct 677 GAGGAAGAGTTGGTCAAAGATACACAAGAGCCTGTACTCGCAGATAGGCTTGCAAAGCTG 736 Query 420 CTTATGATGAGTGTTAATCAGCGCCTTAATGTCGTGAAGCTTAACGAGTTTAAGCGGAGT 479 |||||| |||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 737 CTTATGTTGAGTGTTAATCAGCGTCTCAATGTCGTGAAGCTTAACGAGTTTAAGCGGAGC 796 Query 480 TTTGGATTCCCTGATGATTATGTGATCAGGATACTACCAAAGTACTCAGATGTGTTTCGA 539 ||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||| Sbjct 797 TTTGGATTCCCTGATGATTATGTTATCAGAATAGTTCCAAAGTACTCAGATGTGTTTCGG 856 Query 540 TTAGTAAATTATAGTGGGAGGAAGAGTTCAATGGAGATCGAGCTTTTGTTGTGGAAGCCT 599 ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 857 TTAGTGAATTATAGTGGTAGGAAGAGTTCAATGGAGATTGAGCTTTTGTTGTGGAAGCCT 916 Query 600 GAGTTGGCTGTTTCTGCAGTGGAAGCAGCAGCGAAGAATTGTGGCTCTCAGCCTAGTTTC 659 ||||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||||||| Sbjct 917 GAGTTGGCTGTCTCTGCAGTTGAAGCAGCAGCAAAGAAATGTGGCTCTGAGCCTAGTTTC 976 Query 660 TCTTGCTCTTTACCTTCCACATGGACCAAACCGTGGGAAAGGTTTATGGAGTTTAATGCC 719 ||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||| Sbjct 977 TCTTGCTCTCTACCTTCCACGTGGACCAAACCGTGGGAGAGGTTCATGGAGTTTAATGCC 1036 Query 720 TTTCCTTACATATCTCCGTATGACGATCATGGGGATCTTGTTGAGGGTTCAAAGGAGAGT 779 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1037 TTTCCTTACATATCTCCGTATGAGGATCATGGGGATCTTGTTGAGGGTTCAAAGGAGAGT 1096 Query 780 GAGAAGAGAAGCGTTGGTTTGGTGCACGAATTACTCTCGTTAACGTTGTGGAAGAAGCTG 839 ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 1097 GAGAAGAGAAGTGTTGGTTTGGTGCACGAGTTACTCTCGTTGACGTTGTGGAAAAAGCTG 1156 Query 840 TCTATCGTAAAGCTGAGTCATTTCAAGAGGGAATTTGGGTTGCCGGAGAAGCTAAATGCT 899 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 1157 TCAATCGTAAAGCTGAGTCATTTCAAGAGGGAATTTGGGTTACCGGAGAAGCTAAATGGT 1216 Query 900 ATGCTTCTGAAGCATCCAGGCATATTCTACGTCGCAAACAAGTATCAGGTTCACACTGTG 959 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1217 ATGCTTCTGAAGCATCCAGGCATATTCTACGTTGGAAACAAGTATCAGGTTCACACTGTG 1276 Query 960 ATCCTTAGAGAAGGATACAATGGCTCGGAATTGATTCACAAGGACCCGCTCGTTGTTGTG 1019 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1277 ATCCTCAGAGAAGGATACAATGGCTCGGAATTGATTCACAAGGACCCGCTCGTTGTTGTG 1336 Query 1020 AAGGAAAAATTTGGGGAACTGATGCAGCAGGGCTTGTATGAGTATAATCACAGGCGATAT 1079 ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1337 AAGGATAAATTTGGGGAATTGATGCAGCAGGGCTTGTATGAGTATAATCACAGGCGATAT 1396 Query 1080 TTGGCTAATCTagagaagaagagagagaAAGGTATTGAATCTTTGAAGCCTGTGGTGCGA 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1397 TTGGCTAATCTAGAGAAGAAGAGAGAGAAAGGTATTGAATCTTTGAAGCCTGTGGTGCGA 1456 Query 1140 AAGAAAGACAGGAATCACGATGGAGATGATGTCGATGAAGAAGAAAACCATGGGGATCGA 1199 |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1457 AAGAAAGACAGGAACCACGATCGAGATGATGTCGATGAAGAAGAAAACCATGGGGATCGA 1516 Query 1200 CCAGGTGGTCTGTTCGATCCAGAAGAGAGAAAAAGGTTTTATCAGATTCTCTTCAGTGAC 1259 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1517 CCAGGTGGTCTGTTTGATCCAGAAGAGAGAAAAAGGTTTTATCAGATTCTCTTCAGTGAC 1576 Query 1260 ACCCAATAAGAACATT 1275 |||||||||||||||| Sbjct 1577 ACCCAATAAGAACATT 1592 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63353087790 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5