BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933672
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31290.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 2028 0.0
> AT2G31290.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr2:13343814-13346012 FORWARD LENGTH=2199
Length=2199
Score = 2028 bits (1098), Expect = 0.0
Identities = 1217/1276 (95%), Gaps = 2/1276 (0%)
Strand=Plus/Plus
Query 1 TTTGGTAATCAGACACTGATATGGCTATGACACGAGAGTTATAT-GGAATTCTGGGCACC 59
||||||| ||||| |||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 318 TTTGGTAGTCAGAGACTGATATGGCTATGACACGAGAGTTATATCGG-ATTCTGGGTACC 376
Query 60 AAGTATGTTCCATTGTTAATCCGAAGATTCTCACTTTGGTCTACGAAGAAAGACCCTGAT 119
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 377 AAGTATGCTCCATTGTTAATCCGAAGATTCTCACTTTGGTCAACGAAGAAAGACCCTGAT 436
Query 120 CTCGAATCTGCTCTCTCGCGTAACAAGCGATGGATAGTTAACAGCCGGCTCAAGAACATT 179
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 437 CTCGAATCTGCTCTCTCGCGTAACAAGCGATGGATTGTTAACAGTCGGCTCAAGAACATT 496
Query 180 ATCTTAAGGTGTCCCAACCAGGTTGCATCGGTTAAGTTTCTACAGAAGAAGTTTAAGACT 239
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 497 ATCTTAAGGTGTCCCAATCAGGTTGCATCGATTAAGTTTCTACAGAAGAAGTTTAAGACT 556
Query 240 CTTGATCTACAGGGGAAAGCCTTGAATTGGCTTAAGAAGTACCCTTGTTGTTTCCACCTT 299
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 557 CTTGATCTTCAGGGGAAAGCCTTGAATTGGCTTAAGAAATACCCTTGTTGTTTCCATGTT 616
Query 300 TATCTCGAGAACGATGAGTATTACTGTCGGTTAACGAAACCGATGATGACGCTTGTGGAA 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 617 TATCTCGAGAACGATGAGTATTACTGTAGGTTAACGAAACCGATGATGACGCTTGTGGAA 676
Query 360 GAAGAAGAATTGGTCAAAGATACACAAGAGCCTCTGCTTGCTGATAGGCTTGCAAAGCTG 419
|| ||||| |||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct 677 GAGGAAGAGTTGGTCAAAGATACACAAGAGCCTGTACTCGCAGATAGGCTTGCAAAGCTG 736
Query 420 CTTATGATGAGTGTTAATCAGCGCCTTAATGTCGTGAAGCTTAACGAGTTTAAGCGGAGT 479
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 737 CTTATGTTGAGTGTTAATCAGCGTCTCAATGTCGTGAAGCTTAACGAGTTTAAGCGGAGC 796
Query 480 TTTGGATTCCCTGATGATTATGTGATCAGGATACTACCAAAGTACTCAGATGTGTTTCGA 539
||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||||||
Sbjct 797 TTTGGATTCCCTGATGATTATGTTATCAGAATAGTTCCAAAGTACTCAGATGTGTTTCGG 856
Query 540 TTAGTAAATTATAGTGGGAGGAAGAGTTCAATGGAGATCGAGCTTTTGTTGTGGAAGCCT 599
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 857 TTAGTGAATTATAGTGGTAGGAAGAGTTCAATGGAGATTGAGCTTTTGTTGTGGAAGCCT 916
Query 600 GAGTTGGCTGTTTCTGCAGTGGAAGCAGCAGCGAAGAATTGTGGCTCTCAGCCTAGTTTC 659
||||||||||| |||||||| ||||||||||| ||||| ||||||||| |||||||||||
Sbjct 917 GAGTTGGCTGTCTCTGCAGTTGAAGCAGCAGCAAAGAAATGTGGCTCTGAGCCTAGTTTC 976
Query 660 TCTTGCTCTTTACCTTCCACATGGACCAAACCGTGGGAAAGGTTTATGGAGTTTAATGCC 719
||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 977 TCTTGCTCTCTACCTTCCACGTGGACCAAACCGTGGGAGAGGTTCATGGAGTTTAATGCC 1036
Query 720 TTTCCTTACATATCTCCGTATGACGATCATGGGGATCTTGTTGAGGGTTCAAAGGAGAGT 779
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1037 TTTCCTTACATATCTCCGTATGAGGATCATGGGGATCTTGTTGAGGGTTCAAAGGAGAGT 1096
Query 780 GAGAAGAGAAGCGTTGGTTTGGTGCACGAATTACTCTCGTTAACGTTGTGGAAGAAGCTG 839
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1097 GAGAAGAGAAGTGTTGGTTTGGTGCACGAGTTACTCTCGTTGACGTTGTGGAAAAAGCTG 1156
Query 840 TCTATCGTAAAGCTGAGTCATTTCAAGAGGGAATTTGGGTTGCCGGAGAAGCTAAATGCT 899
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1157 TCAATCGTAAAGCTGAGTCATTTCAAGAGGGAATTTGGGTTACCGGAGAAGCTAAATGGT 1216
Query 900 ATGCTTCTGAAGCATCCAGGCATATTCTACGTCGCAAACAAGTATCAGGTTCACACTGTG 959
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1217 ATGCTTCTGAAGCATCCAGGCATATTCTACGTTGGAAACAAGTATCAGGTTCACACTGTG 1276
Query 960 ATCCTTAGAGAAGGATACAATGGCTCGGAATTGATTCACAAGGACCCGCTCGTTGTTGTG 1019
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 ATCCTCAGAGAAGGATACAATGGCTCGGAATTGATTCACAAGGACCCGCTCGTTGTTGTG 1336
Query 1020 AAGGAAAAATTTGGGGAACTGATGCAGCAGGGCTTGTATGAGTATAATCACAGGCGATAT 1079
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 AAGGATAAATTTGGGGAATTGATGCAGCAGGGCTTGTATGAGTATAATCACAGGCGATAT 1396
Query 1080 TTGGCTAATCTagagaagaagagagagaAAGGTATTGAATCTTTGAAGCCTGTGGTGCGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 TTGGCTAATCTAGAGAAGAAGAGAGAGAAAGGTATTGAATCTTTGAAGCCTGTGGTGCGA 1456
Query 1140 AAGAAAGACAGGAATCACGATGGAGATGATGTCGATGAAGAAGAAAACCATGGGGATCGA 1199
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1457 AAGAAAGACAGGAACCACGATCGAGATGATGTCGATGAAGAAGAAAACCATGGGGATCGA 1516
Query 1200 CCAGGTGGTCTGTTCGATCCAGAAGAGAGAAAAAGGTTTTATCAGATTCTCTTCAGTGAC 1259
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 CCAGGTGGTCTGTTTGATCCAGAAGAGAGAAAAAGGTTTTATCAGATTCTCTTCAGTGAC 1576
Query 1260 ACCCAATAAGAACATT 1275
||||||||||||||||
Sbjct 1577 ACCCAATAAGAACATT 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63353087790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5