BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933673
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31305.1 | Symbols: INH3 | inhibitor-3 | chr2:13350422-13351... 484 2e-136
AT1G75394.1 | Symbols: | Pseudogene of AT2G31305 | chr1:282947... 318 2e-86
> AT2G31305.1 | Symbols: INH3 | inhibitor-3 | chr2:13350422-13351464
FORWARD LENGTH=643
Length=643
Score = 484 bits (262), Expect = 2e-136
Identities = 327/358 (91%), Gaps = 5/358 (1%)
Strand=Plus/Plus
Query 4 AAATCTTATCTTGAGCTATGAGCACAGCGACAAGGCCTTCTTCTTCTGCAACAACCTCTG 63
||| || ||||| ||||||||||||||| ||||||||||| ||||| |||||||| ||||
Sbjct 71 AAAGCTAATCTTCAGCTATGAGCACAGCAACAAGGCCTTCCTCTTCAGCAACAACTTCTG 130
Query 64 TTATATTAGAAAACCCTGTTTCTCAATCCCAGCCTACTGAAAGATTAGTCCTTCGCTTGA 123
| |||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||
Sbjct 131 TCATATTAGAAAACCCTGTTTCTCAATCACAACCTACTGAAAGATTAGTGCTTCGGTTGA 190
Query 124 ACCGTAAGAAGAAGAAAGTTTCATGGAAAGACGGGACCGTTGACAACGAGTTCATGCAGA 183
|||| |||||||||||||||||||||||||| ||||| || ||||| ||||| |||||||
Sbjct 191 ACCGGAAGAAGAAGAAAGTTTCATGGAAAGATGGGACTGTAGACAATGAGTTTATGCAGA 250
Query 184 AGAAGAGTTCCAAGAAGTGTTGCATCTTTCACAAACAGAAGCCCTTTGATGAGGATGACA 243
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 251 AGAAGAGTTCGAAGAAGTGTTGCATCTTTCATAAACAGAAGCCTTTTGATGAGGATGACA 310
Query 244 GTGAAGAAGAAGATGACAACCATCACCATCATC-ATGATCATGACCATGACCACTCTGAA 302
|||||||||||||||| || || ||||||| | ||||||| ||||||| ||||| |||
Sbjct 311 GTGAAGAAGAAGATGATAA-CA--ACCATCA-CTGTGATCATAACCATGAACACTCCGAA 366
Query 303 TCTGGTGAGGCATCTTCTTCTAATGATTCTAAAGCCGTTGACTAATCAATCAGGTTTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TCTGGTGAGGCATCTTCTTCTAATGATTCTAAAGCCGTTGACTAATCAATCAGGTTTT 424
> AT1G75394.1 | Symbols: | Pseudogene of AT2G31305 | chr1:28294786-28295097
FORWARD LENGTH=312
Length=312
Score = 318 bits (172), Expect = 2e-86
Identities = 279/328 (85%), Gaps = 17/328 (5%)
Strand=Plus/Plus
Query 21 ATGAGCACAGCGACAAGGCCTTCTTCTTC-TGCAACAACCTCTGTTATATTAGAAAACCC 79
|||||||| ||||| |||||||| ||||| | | || | | | || | |||||| ||
Sbjct 1 ATGAGCACTGCGACTAGGCCTTCGTCTTCAT-CGACTA-C-C----ATCTGAGAAAATCC 53
Query 80 TGTTTCTCAATCCCAGCCTACTGAAAGATTAGTCCTTCGCTTGAACCGTAAGAAGAAGAA 139
||||||||| || ||||| || ||||||||||| ||||| |||||| | |||||||||||
Sbjct 54 TGTTTCTCATTCACAGCCAACAGAAAGATTAGTGCTTCGGTTGAACAGGAAGAAGAAGAA 113
Query 140 AGTTTCATGGAAAGACGGGACCGTTGACAACGAGTTCATGCAGAAGAAGAGTTCCAAGAA 199
||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct 114 AGTTTCATGGAAAGACGGGACGGTGGACAACGAGTTTATGCAGAAGAAGAGTTCAAAGAA 173
Query 200 GTGTTGCATCTTTCACAAACAGAAGCCCTTTGATGAGGATGACAGTGAAGAAGAAGATGA 259
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 174 ATGTTGTATCTTTCATAAACAAAAGCCCTTTGATGAGGATGACAGTGAAGAAGAAGATAA 233
Query 260 CAACCATCACCATCATCATGATCATGACCATGACCACTCTGAATCTGGTGAGGCATCTTC 319
|||| | ||||||| ||| || |||||| ||||| |||||| |||||||||||||
Sbjct 234 CAAC-A--ACCATCACCAT---CA---CCATGAACACTCCGAATCTTGTGAGGCATCTTC 284
Query 320 TTCTAATGATTCTAAAGCCGTTGACTAA 347
|||||| ||||||||||| ||||||||
Sbjct 285 TTCTAACGATTCTAAAGCATTTGACTAA 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17241837907
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5