BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933679

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31345.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   405    1e-112


> AT2G31345.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G06135.1); Has 
35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 
| chr2:13365232-13365800 REVERSE LENGTH=569
Length=569

 Score =  405 bits (219),  Expect = 1e-112
 Identities = 242/253 (96%), Gaps = 2/253 (1%)
 Strand=Plus/Plus

Query  1    GAAAAAATAAAATTCTAAGCATGATGAAGAAACAATTGGTGGTCGTAGTTATGTTAGTTG  60
            |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct  73   GAAAAACTAAAATTCTAAACATGATGAAAAAACAATTGGTGGTCGTAGTTATGTTAGTTG  132

Query  61   TTATGTTCGTTGTTTTCTTGGACGCTACGCAAGTTGAAGCCATGAGGCCTTTCCCGGAGA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  
Sbjct  133  TTATGTTCGTTGTTTTCTTGGACGCTACGCAAGTTGAAGCCATGAGGCCTTTCCCAGATC  192

Query  121  CCGTAGATGAGATCCGGCTTCTGTTTCAGGCGTTGCAAAGAGGTCCGGTCCGTGGTTCTG  180
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  193  CCGTAGATGAGATCCGGCTTCTGTTTCAGGCGTTGCAAAGAGGACCGGTCCGTGGTTCTG  252

Query  181  GTCGGAACGGTTGCACCAATATTCCTCGCGGTTCAGGCAGATGCCATAACTGAGCTGTC-  239
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct  253  GTCGGAACGGTTGCACTAATATTCCTCGCGGTTCAGGCAGATGCCATAACTGAGCTGTCT  312

Query  240  -ACACGAATCTTC  251
             | ||||||||||
Sbjct  313  TATACGAATCTTC  325



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11511314521


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5