BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933688
Length=641
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31410.1 | Symbols: | unknown protein; Has 1719 Blast hits ... 955 0.0
> AT2G31410.1 | Symbols: | unknown protein; Has 1719 Blast hits
to 1091 proteins in 184 species: Archae - 5; Bacteria - 24;
Metazoa - 559; Fungi - 169; Plants - 192; Viruses - 1; Other
Eukaryotes - 769 (source: NCBI BLink). | chr2:13392022-13392851
REVERSE LENGTH=830
Length=830
Score = 955 bits (517), Expect = 0.0
Identities = 604/645 (94%), Gaps = 9/645 (1%)
Strand=Plus/Plus
Query 3 GCCACACGAAGAAGAAGGAA-AAATGGCTTGCACCGTAGATTTCCGGTGCCTTGACGAAG 61
||||||| |||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 12 GCCACACAAAGAAG-A-GAAGAAATGGCTTGCACCGTAGATTTCCGGTGCCTTGACGAAG 69
Query 62 GATTCGGCGGCAAAACCTACAAACGTAAACGCGAATCTCAAGAACAAGCCGCCGCCGAAG 121
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 70 GATTCGGCGGCAAAACCTACAAACGCAAACGCGAATCTCAAGAACAAGCCGCCGCCGAAG 129
Query 122 CAATCGCCGATGAAGCATCTATGGACATCGATGGTGCTCCTCCTTCCGCAAAACGCAGCG 181
|||||||||||||||| || |||||||||||||||||||||||| |||| ||||| ||||
Sbjct 130 CAATCGCCGATGAAGCTTCCATGGACATCGATGGTGCTCCTCCTGCCGCGAAACGTAGCG 189
Query 182 CCGTCGCTTCCTCTGAAAATCCTGACAAACCTATTGCTGTGGCGGTTGAGAGACCGACCT 241
|||||||||||||||||||||| ||||||||||||||| | || || |||||||| ||||
Sbjct 190 CCGTCGCTTCCTCTGAAAATCCAGACAAACCTATTGCTCTAGCTGTCGAGAGACCAACCT 249
Query 242 ACGACGGTGTAATCGCCGGGAAAGTCTCCGGACGGAATTGGAAACAGCCGCGAACTCATA 301
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 250 ACGACGGTGTAATCGCCGGGAAAGTCTCCGGACGGAACTGGAAACAGCCGCGAACTCATA 309
Query 302 GATCTTCGGGGAGGTTTGTGAAGAACAGGAAACCAGATCTGGAGGAGATGAAGAGGCAGA 361
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 310 GATCTTCAGGGAGGTTTGTGAAGAACAGGAAACCAGATCTGGAGGAGATGAAGAGGCA-A 368
Query 362 AGG-AGATTAAGAGAGCGTATAAGGAGAGAATGAATGAGCTTaaggaagagattaggaat 420
||| ||||||||| ||||||||||||||| |||||||||| |||||||||||||||| |
Sbjct 369 AGGGAGATTAAGAAAGCGTATAAGGAGAGGGTGAATGAGCTGAAGGAAGAGATTAGGAGT 428
Query 421 aataaggttgagaagaggaagaagaaggaagagagagagaagaggaagaaggagaaTGTT 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 429 AATAAGGTTGAGAAGAGGAAGAAGAAGGAAGAGAGAGAGAAGCGGAAGAAGGAGAATGTT 488
Query 481 TTGAGAACTGGTACTAAGTTGCAGAAGATTACAAATCCTAAGACTTTGAAGAAAATTGCT 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 489 TTGAGAACTGGTACTAAGTTGCAGAAGATTACAAATCCCAAGACTTTGAAGAAAATTTCT 548
Query 541 AAGTCTAAG---CAGAGGAAGCATCTCAAGAATATTCCTGAGGAGATGTTGAGTGGTGGT 597
| ||||||| ||||||||||| || ||||| |||||||| ||||||||||||||||||
Sbjct 549 ATGTCTAAGAAGCAGAGGAAGCAGCTTAAGAAAATTCCTGACGAGATGTTGAGTGGTGGT 608
Query 598 AGCAAGAAGAGTATCACAAATTAGGGGTTTTT-GTTCTTTATCTT 641
||||||||||||||||| |||||| ||||||| |||| || ||||
Sbjct 609 AGCAAGAAGAGTATCACGAATTAGTGGTTTTTTGTTCCTTCTCTT 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30944234552
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5