BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933689

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31420.1 | Symbols:  | Domain of unknown function (DUF313)  ...   226    2e-58


> AT2G31420.1 | Symbols:  | Domain of unknown function (DUF313) 
 | chr2:13393364-13394001 REVERSE LENGTH=638
Length=638

 Score =  226 bits (122),  Expect = 2e-58
 Identities = 188/218 (86%), Gaps = 12/218 (6%)
 Strand=Plus/Plus

Query  273  GTTTGAAAGTGGTTTTGGTGGATCCT-AAGTCGCG-TAAGCATGACGTTGATTTAAGGAA  330
            ||||||||||| |||||||||||||| || ||| | |||||||| |||| |||||| |||
Sbjct  394  GTTTGAAAGTGTTTTTGGTGGATCCTGAA-TCG-GATAAGCATGTCGTTTATTTAAAGAA  451

Query  331  GTGGAAAGGTAATGGAAACGGGGTTTGGAAATATGTGTTCAA-TAATGGTTGGAACAAAG  389
            |||||| ||||||    ||   ||||||||||||||||| || | ||||||||||||| |
Sbjct  452  GTGGAATGGTAAT----AC--AGTTTGGAAATATGTGTT-AAGTCATGGTTGGAACAATG  504

Query  390  TGATTGCCACAAAAATCTTTGAAGTCAATCACATGATTGAAATCTGGTCCTTTCGAGATG  449
            ||||||  | |||||||||  |||||||| || |||||||||||||||||||||||||||
Sbjct  505  TGATTGATAAAAAAATCTTCAAAGTCAATGACGTGATTGAAATCTGGTCCTTTCGAGATG  564

Query  450  GAAGTGGAAAAATTTGTTTTGCTCTCTCTTCTCCGACC  487
            ||||||||||| |||| ||||||||||||||||| |||
Sbjct  565  GAAGTGGAAAACTTTGCTTTGCTCTCTCTTCTCCAACC  602


 Score =  156 bits (84),  Expect = 3e-37
 Identities = 131/153 (86%), Gaps = 5/153 (3%)
 Strand=Plus/Plus

Query  125  AGTCCCGAAACACGCGA---TTCGATACCAGACTGGCTTGTGAAAGTGATGAGAAAAGAG  181
            |||||||||||| || |   |||||||||||||||||| |||||||||||||||||||||
Sbjct  162  AGTCCCGAAACATGCAATTCTTCGATACCAGACTGGCTCGTGAAAGTGATGAGAAAAGAG  221

Query  182  AATGGATACGATCCAAAGCTAATCATAAAGAGGAAGCAGCTG-GTTCAAACTGATCTCAA  240
            |||||||||||||||||||| ||||||||||||| |  |||| || | | ||||||||  
Sbjct  222  AATGGATACGATCCAAAGCTGATCATAAAGAGGAGGGTGCTGTGTACGA-CTGATCTCCG  280

Query  241  CACAACCCAATCGTGTCTCTCAATGCATCTCAG  273
             | || |||   |||||||||||||||||||||
Sbjct  281  TAAAAACCAGGGGTGTCTCTCAATGCATCTCAG  313



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27025971086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5