BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933692

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31432.1 | Symbols:  | Plant invertase/pectin methylesterase...   195    2e-49


> AT2G31432.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr2:13397597-13398839 FORWARD 
LENGTH=489
Length=489

 Score =  195 bits (105),  Expect = 2e-49
 Identities = 162/189 (86%), Gaps = 6/189 (3%)
 Strand=Plus/Plus

Query  1    TCATTAACAGACCGTACGGAAATGTCCCAACTCACGGAAGCTGGCTTTGAGGCTGTGCTC  60
            |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct  304  TCATTAACGGACCGTATGGAAATGTCCCAACTCACTGAAGCTGGCTTTGAGGCTGTGCTC  363

Query  61   GATTG-CGACGACGAATGGACAAAGGATA-TA-AATCATTCACAAGTGTCTCCTTTTGCT  117
            ||||| | | ||||||||||||||| ||  || || |||  ||||| || ||||||| ||
Sbjct  364  GATTGTCAA-GACGAATGGACAAAG-ATTCTAGAA-CATGAACAAGCGTGTCCTTTTTCT  420

Query  118  GGCTGGTACCATGATGTTCGAAACCTAATTAAAATTATTCGTGTTATTATTAGAAGGCTT  177
              |||||||||| | |||||||| ||| ||||||||| |||||||||| | | |||||||
Sbjct  421  TACTGGTACCATAAAGTTCGAAAACTAGTTAAAATTACTCGTGTTATTGTCAAAAGGCTT  480

Query  178  AACGCTTAG  186
            ||||| |||
Sbjct  481  AACGCCTAG  489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9205147233


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5