BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933693
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31440.1 | Symbols: | INVOLVED IN: positive regulation of c... 1341 0.0
> AT2G31440.1 | Symbols: | INVOLVED IN: positive regulation of
catalytic activity, protein processing; LOCATED IN: integral
to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aph-1
(InterPro:IPR009294); Has 268 Blast hits to 262 proteins in
79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi -
0; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source:
NCBI BLink). | chr2:13399128-13401206 REVERSE LENGTH=1087
Length=1087
Score = 1341 bits (726), Expect = 0.0
Identities = 762/780 (98%), Gaps = 0/780 (0%)
Strand=Plus/Plus
Query 11 CCGGTGCGGCATGACGGTCGCGGCGGGGATCGGCTATGCGCTGGTGGCTTTGGGACCGTC 70
|||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 144 CCGGTGTGGCATGACGGTCGCGGCGGGTATCGGCTACGCGCTGGTGGCTTTAGGACCGTC 203
Query 71 TCTTTCACTTTTCGTCTCTGTCATCTCCAGAAAGCCCTTTCTCATCCTCACTGTTCTCTC 130
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TCTTTCACTTTTCGTCTCCGTCATCTCCAGAAAGCCCTTTCTCATCCTCACTGTTCTCTC 263
Query 131 CAGTACGTTGCTGTGGCTTGTGAGTCTGATCATCTTGTCGGGATTATGGAGACCATTTCT 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 CAGTACGTTGCTGTGGCTTGTGAGTCTGATCATCTTGTCGGGATTATGGAGACCATTTCT 323
Query 191 TCCTCTCAAAGCCAATGTGTGGTGGCCTTATGCTTTACTGGTTATCACCTCTGTTTGTTT 250
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 324 TCCTCTCAAAGCCAATGTGTGGTGGCCTTATGCTTTACTTGTTATCACCTCTGTTTGTTT 383
Query 251 CCAGGAAGGTCTTCGTTTTCTTTTCTGGAAGGTTTACAAGAGGCTTGAGGATGTCTTGGA 310
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 384 CCAGGAAGGCCTTCGCTTTCTCTTCTGGAAGGTTTACAAGAGGCTTGAGGATGTCTTGGA 443
Query 311 TTCCTTTGCGGATCGTATCTCAAGGCCCCGCCTGTTTCTCACTGATAAGCTGCAGATTGC 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TTCCTTTGCGGATCGTATCTCAAGGCCCCGCCTGTTTCTCACTGATAAGCTGCAGATTGC 503
Query 371 TCTAGCTGGTGGCTTAGGTCATGGTGTGGCGCATGCTGTCTTCTTTTGTTTGAGCCTCTT 430
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 504 TCTAGCTGGTGGTTTAGGTCATGGTGTGGCGCATGCTGTATTCTTTTGTTTGAGCCTCTT 563
Query 431 AACTCCAGCGTTTGGTCCGGCCACATTCTATGTCGAAAGATGTTCGAAGGTGCCATTTTT 490
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 564 AACTCCAGCGTTTGGTCCAGCCACATTCTATGTCGAAAGATGTTCGAAGGTGCCATTTTT 623
Query 491 TCTCATCTCTGCAATCATTGCTCTTGCATTTGTTACGATCCACACATTCTCGATGGTCAT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TCTCATCTCTGCAATCATTGCTCTTGCATTTGTTACGATCCACACATTCTCGATGGTCAT 683
Query 551 TGCTTTCGAAGGGTATGCAAAAGGGAACAAAGTAGATCAAGTAATAGTTCCAGTCATACA 610
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 684 TGCTTTCGAAGGGTATGCAAAAGGGAACAAAGTAGATCAAATAATAGTTCCAGTCATACA 743
Query 611 CCTTGCTGCTGGAATGTTGACATTGGTGAATTTTGCATCGGAAGGTTGTGTGATCGGTGT 670
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 744 CCTTACTGCTGGAATGTTGACATTGGTGAATTTTGCATCGGAAGGTTGTGTGATCGGGGT 803
Query 671 TCCTCTTCTTTACCTTGTGGCATCTTTGACTCTTGTGCATTGTGGAAAAATGGTTTGGCA 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TCCTCTTCTTTACCTTGTGGCATCTTTGACTCTTGTGCATTGTGGAAAAATGGTTTGGCA 863
Query 731 AAGGTTGTTGGAAAGCCGGAACCAAAGCAGCGCTTCACGGTAATCTGGCCTTGGTCCCAG 790
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||
Sbjct 864 AAGGTTGTTGGAAAGCCGGAACCAAAGCAGCGCCTCACGGTAATCTGGCCTCGGTCTCAG 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38630059043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5