BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933697

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31490.1 | Symbols:  | unknown protein; Has 55 Blast hits to...   429    6e-120


> AT2G31490.1 | Symbols:  | unknown protein; Has 55 Blast hits 
to 55 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:13411983-13413246 FORWARD 
LENGTH=537
Length=537

 Score =  429 bits (232),  Expect = 6e-120
 Identities = 244/250 (98%), Gaps = 0/250 (0%)
 Strand=Plus/Plus

Query  13   GAAAGCGAAGATGGGTGGAGGAATGGAAACGAACAAGAACAAGTTCATCGAGGATTGGGG  72
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  68   GAAAGCGAAGATGGGTGGAGGAATGGAAACGAACAAGAACAAGTTCATCGAGGACTGGGG  127

Query  73   ATCCGCTAGAGAGAATCTCGAGCACAATTTCCGCTGGACTCGCCGTAACTTCGCTCTCAT  132
            ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  128  ATCTGCTAGAGAGAATCTCGAGCACAATTTCCGCTGGACTCGTCGTAACTTCGCTCTCAT  187

Query  133  TGGAATCTTCGGCATCGCTCTCCCGATCATTGTTTACAAGGGAATCGTCAAAGATTTCCA  192
             |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  188  CGGAATCTTCGGCATCGCTCTCCCGATCATTGTCTACAAGGGAATCGTCAAAGATTTCCA  247

Query  193  TATGCAAGATGAAGATGCAGGCAGACCACACAGAAAGTTCCTCTGAGGTTGTTTGTAAGA  252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  248  TATGCAAGATGAAGATGCAGGCAGACCACACAGAAAGTTCCTCTGAGGTTGTTTGCAAGA  307

Query  253  ACACTCTCTG  262
            ||||||||||
Sbjct  308  ACACTCTCTG  317



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11963724262


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5