BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933698
Length=1789
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31500.1 | Symbols: CPK24 | calcium-dependent protein kinase... 3022 0.0
> AT2G31500.1 | Symbols: CPK24 | calcium-dependent protein kinase
24 | chr2:13413764-13416536 FORWARD LENGTH=2213
Length=2213
Score = 3022 bits (1636), Expect = 0.0
Identities = 1738/1788 (97%), Gaps = 3/1788 (0%)
Strand=Plus/Plus
Query 1 ACAACCCAAAAA-AGAATCCCATGGGAAGTTGTGTTTCGTCGCCATTGAAAGGCTCTCCT 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ACAACCCAAAAAGAGAATCCCATGGGAAGTTGTGTTTCGTCGCCATTGAAAGGCTCTCCT 291
Query 60 TTTGGAAAGAGACCGGTAAGAAGGCGACACAGTAGTAATAGCAGAACATCCTCTGTTCCT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTTGGAAAGAGACCGGTAAGAAGGCGACACAGTAGTAATAGCAGAACATCCTCTGTTCCT 351
Query 120 CGTTTCGATTCTTCAACTAATCTTTCCCGGAGATTGATTTTCCAGCCACCAAGCCGCGTT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CGTTTCGATTCTTCAACTAATCTTTCCCGGAGATTGATTTTCCAGCCACCAAGCCGCGTT 411
Query 180 CTTCCCGAGCCTATCGGAGATGGAATCCACCTCAAGTATGATTTGGGGAAAGAATTAGGC 239
|| |||||||||||||| |||||||| |||||||||||||||||||| |||||| |||||
Sbjct 412 CTCCCCGAGCCTATCGGTGATGGAATTCACCTCAAGTATGATTTGGGAAAAGAACTAGGC 471
Query 240 CGCGGTGAATTTGGTGTCACTCATGAATGTATCGAGATCAGTACCCGAGAAAGGTTTGCG 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 472 CGTGGTGAATTTGGTGTCACTCATGAATGTATCGAGATCAGTACCCGAGAAAGATTTGCG 531
Query 300 TGTAAGAGGATATCGAAGGAGAAGCTAAGGACGGAGATAGATGTGGAGGATGTGAGAAGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TGTAAGAGGATATCGAAGGAGAAGCTAAGGACGGAGATAGATGTGGAGGATGTGAGAAGA 591
Query 360 GAGGTTGAGATCATGAGATGTTTACCAAAACATCCAAATATTGTTAGCTTTAAGGAAGCT 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 592 GAGGTTGAGATCATGAGATGTTTACCAAAACATCCTAATATTGTTAGCTTTAAGGAAGCT 651
Query 420 TTTGAGGACAAAGACGCTGTCTATCTTGTCATGGAGATTTGTGAAGGAGGTGAACTTTTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTTGAGGACAAAGACGCTGTCTATCTTGTCATGGAGATTTGTGAAGGAGGTGAACTTTTT 711
Query 480 GACCGCATTGTCTCTAGAGGGCATTACACTGAACGCGCCGCTGCATCTGTCGCTAAAACC 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 712 GACCGCATTGTCTCTAGAGGGCATTACACTGAACGCGCCGCTGCATCTGTTGCTAAAACC 771
Query 540 ATTCTTGAAGTTGTCAAGGTGTGTCATGAACATGGAGTGATTCATCGTGATCTTAAACCA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 ATTCTTGAAGTTGTCAAGGTGTGTCATGAACATGGAGTGATTCATCGTGATCTTAAACCA 831
Query 600 GAGAACTTCCTCTTTTCGAATGGAACTGAGACTGCACAACTCAAAGCAATTGATTTTGGT 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 832 GAGAACTTCCTCTTTTCGAATGGAACTGAGACTGCACAACTCAAAGCCATTGATTTTGGT 891
Query 660 CTCTCCATTTTCTTCAAACCTGCCCAGCGGTTCAATGAGATTGTGGGAAGTCCTTACTAC 719
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 892 CTCTCCATTTTCTTCAAACCGGCCCAGCGGTTCAATGAGATTGTGGGAAGTCCTTACTAC 951
Query 720 ATGGCTCCAGAGGTTTTGAGACGAAATTACGGTCCTGAGATCGATGTTTGGAGTGCAGGT 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 952 ATGGCTCCAGAGGTTTTGAGACGAAATTACGGTCCTGAGATCGATGTTTGGAGTGCTGGT 1011
Query 780 GTTATACTCTATATCTTGCTTTGTGGTGTCCCTCCTTTTTGGGCAGAAACCGAGGAAGGA 839
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1012 GTTATACTCTATATCTTGCTTTGTGGTGTTCCTCCCTTTTGGGCAGAAACCGAGGAAGGA 1071
Query 840 ATCGCGCACGCTATTGTGAGAGGGAACATCGATTTCGAGAGGGATCCGTGGCCAAAAGTC 899
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1072 ATCGCGCACGCTATTGTGAGAGGGAACATCGATTTCGAGAGAGATCCATGGCCAAAAGTC 1131
Query 900 TCACGTGAAGCCAAGGAACTCGTTAAGAACATGCTTGATGCAAATCCTTATAGCCGGCTC 959
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1132 TCACATGAAGCCAAGGAACTCGTTAAGAACATGCTTGATGCAAATCCTTATAGCAGACTC 1191
Query 960 ACAGTCCAAGAAGTGCTTGAACATCCATGGATCCGGAATGCAGACAGAGCACCAAATGTG 1019
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1192 ACAGTCCAAGAAGTGCTTGAACATCCATGGATCCGGAACGCAGAGAGAGCACCAAATGTG 1251
Query 1020 AATCTTGGAGATAACGTCAGGACCAAGATTCAACAGTTCTTGTTGATGAACAGGTTCAAG 1079
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1252 AATCTTGGAGATAACGTCAGGACCAAGATTCAACAATTCTTGTTGATGAACAGGTTCAAG 1311
Query 1080 AAGAAAGTCCTCAGGATCGTAGCAGACAATTTACCAAACGAGGAGATAGCAGCGATAGTA 1139
||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1312 AAGAAAGTCCTCAGGATTGTAGCGGACAATCTACCAAACGAGGAGATAGCAGCGATAGTA 1371
Query 1140 CAGATGTTTCAAACGATGGACACTGATAAGAATGGTCACTTGACTTTTGAGGAGCTAAGA 1199
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 CAGATGTTTCAAACAATGGACACTGATAAGAATGGTCACTTGACTTTTGAGGAGCTAAGA 1431
Query 1200 GATGGGCTGAAGAAGATTGGACAAGTAGTTCCCGATGGCGATGTGAAGATGCTAATGGAT 1259
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1432 GATGGACTGAAGAAGATTGGACAAGTTGTTCCCGATGGCGATGTGAAGATGCTAATGGAT 1491
Query 1260 GCAGCGGACACAGATGGAAATGGGATGTTGAGCTGTGAGGAGTTTGTGACACTGTCAATA 1319
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1492 GCAGCGGATACAGATGGAAATGGGATGTTGAGCTGTGATGAGTTTGTGACACTCTCAATA 1551
Query 1320 CATTTGAAGAGAATGGGATGTGATGAGCATTTGCAGGAAGCATTCAAGTATTTTGACAAG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 CATTTGAAGAGAATGGGATGTGATGAGCATTTGCAGGAAGCATTCAAGTATTTTGACAAG 1611
Query 1380 AACAGGAATGGATTTATCGAGCTAGATGAGCTCAAGGAAGCTCTTTGCGATGATAAGCTA 1439
||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1612 AACGGGAACGGATTTATCGAGCTAGATGAGCTCAAGGTAGCTCTTTGCGATGATAAGCTA 1671
Query 1440 GGCCATGGTAACGGTAACGACCAGTGGATCAAAGATATCTTCTTTGACGTAGACCTCAAC 1499
||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1672 GGCCACGCTAACGGTAACGACCAGTGGATCAAAGATATCTTCTTTGACGTCGACCTCAAC 1731
Query 1500 AAGGATGGACGAATAAGCTTTGATGAGTTTAAGGCGATGATGAAATCAGGGACGGACTGG 1559
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1732 AAGGATGGACGGATAAGCTTTGATGAGTTTAAGGCAATGATGAAATCAGGGACGGATTGG 1791
Query 1560 AAAATGGCTTCGAGGCAGTACTCGAGGGCGTTGTTGAATGCTCTAAGCATCAAAATGTTC 1619
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1792 AAAATGGCGTCGAGGCAGTACTCGAGGGCGTTGTTGAATGCTCTAAGCATCAAGATGTTC 1851
Query 1620 AAAGAAGATTTTGGGGACAATGGTCCTAAAG-CACATTCCATGGAGTTCCCTATAGCAAG 1678
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1852 AAAGAAGATTTTGGGGACAATGGTCCTAA-GTCACATTCCATGGAGTTCCCTATAGCAAG 1910
Query 1679 GAAGAGGGCTAAGCTACTTGACGCTCCAAAGAACAAATCAATGGAACTTCAGGTCTCCAA 1738
||||||||||||||| ||||| ||||| ||||||||||||||||| |||||| |||||||
Sbjct 1911 GAAGAGGGCTAAGCTGCTTGATGCTCCCAAGAACAAATCAATGGAGCTTCAGATCTCCAA 1970
Query 1739 AACCTATAAACCCTCAGGTCTAAGAAACTAAAGAAGAGAAAAAATGAA 1786
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 AACCTATAAACCCTCAGGTCTAAGAAACTAAAGAAGAGAAAAAATGAA 2018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88503560835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5