BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933702

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G45150.1 | Symbols:  | unknown protein; Has 219 Blast hits t...   296    9e-80


> AT1G45150.1 | Symbols:  | unknown protein; Has 219 Blast hits 
to 202 proteins in 78 species: Archae - 0; Bacteria - 166; 
Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes 
- 17 (source: NCBI BLink). | chr1:17077448-17082503 REVERSE 
LENGTH=2272
Length=2272

 Score =  296 bits (160),  Expect = 9e-80
 Identities = 211/235 (90%), Gaps = 6/235 (3%)
 Strand=Plus/Plus

Query  15    ACTGATATGA-GGAAAGCAGTTGTTGTTTCAAACCTTGCAGTGAGTATAAAGCTAAGATT  73
             |||||||||| || ||| || |||||||||||||||| || || |||| |||||||||||
Sbjct  921   ACTGATATGATGG-AAGAAGATGTTGTTTCAAACCTTTCACTGCGTATCAAGCTAAGATT  979

Query  74    GACAGTTTGGGAATTTATTATTCTAGTGACTCTATCACTCTCTGCTGTTATATGC-GTCT  132
             ||||||||||||||||||||||| |||||||| ||||||| |||||||||| ||  ||||
Sbjct  980   GACAGTTTGGGAATTTATTATTCCAGTGACTCCATCACTCCCTGCTGTTAT-TGGTGTCT  1038

Query  133   CTGACACTGTAATTGAGGATCGTTTTGATGTTGAACATGGAAGTGAAGAGTGGTACAAGA  192
             |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct  1039  CTGACACTGTTATTGAGGATCGTTTTGCTGTTGAACATGGAAGTGAAGATTGGTACAAGA  1098

Query  193   AGTTGGGTCTCCATTTTAAGTGGCTTCTTCA-TCATCGGATCAATCCATACTTTT  246
             | |||| |||||||||||| ||||||||||| | ||||||||| ||| |||||||
Sbjct  1099  AATTGGATCTCCATTTTAAATGGCTTCTTCAGT-ATCGGATCAGTCCGTACTTTT  1152



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17995854142


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5