BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933710

Length=1010
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22110.1 | Symbols: ATDPB2, CYL2, DPB2 | DNA polymerase epsi...   237    2e-61
  AT2G31625.1 | Symbols:  | unknown pseudogene | chr2:13453331-13...   200    2e-50


> AT5G22110.1 | Symbols: ATDPB2, CYL2, DPB2 | DNA polymerase epsilon 
subunit B2 | chr5:7330825-7334205 REVERSE LENGTH=1854
Length=1854

 Score =  237 bits (128),  Expect = 2e-61
 Identities = 266/327 (81%), Gaps = 32/327 (10%)
 Strand=Plus/Plus

Query  470   GTCCCTTGACAGTCTTGCCAAGATGCGGTTTACCAG-AGTATTCAACCGAAGAGCTTCGA  528
             ||||||  ||||||||||||||||||| |||||| | | |||| ||||||||||||||||
Sbjct  1142  GTCCCTCAACAGTCTTGCCAAGATGCGCTTTACC-GAAATATTTAACCGAAGAGCTTCGA  1200

Query  529   GAA-GTTATTCCCAATGCGATATTTTCAAGCAATCCTTGC-------AG-----------  569
              ||  ||||||||||||| |||||||||||||||||||||       ||           
Sbjct  1201  -AACATTATTCCCAATGCAATATTTTCAAGCAATCCTTGCAGAGTAAAGTTCTATAACCA  1259

Query  570   -GAGATTGTGTTCTTCCGACAAGACCTTGTGGTACCGGATGAGCCGTTCACGCTT-GTTA  627
              ||||||||||||||||||||||| ||| | ||| |||||| | |||||| |||| | ||
Sbjct  1260  AGAGATTGTGTTCTTCCGACAAGATCTTCT-GTATCGGATGCGTCGTTCATGCTTAG-TA  1317

Query  628   AAACCTTCCTCAGAAGAAACTAATGACCCCTTTGAA-CACCTTGTCTCCA-AATTAATTC  685
             |  ||||||||||||||||| ||||| |||||| || || ||||||| || || ||| ||
Sbjct  1318  ACCCCTTCCTCAGAAGAAACGAATGA-CCCTTTTAAGCATCTTGTCTACACAA-TAACTC  1375

Query  686   ATCAGAGCCATCTATGTCCTCTACCTCTCTTGTTTCAACCAATAATTTGGAACTATGATC  745
             ||||||||||||||||||||||||||||| || | ||||| || ||||||||||| ||||
Sbjct  1376  ATCAGAGCCATCTATGTCCTCTACCTCTCATGGTGCAACCCATCATTTGGAACTACGATC  1435

Query  746   ACTG-TCTACGACTATATCCAACTCCT  771
             || | ||| ||||| || |||||||||
Sbjct  1436  AC-GCTCTTCGACTGTACCCAACTCCT  1461


 Score =  132 bits (71),  Expect = 8e-30
 Identities = 94/105 (90%), Gaps = 1/105 (1%)
 Strand=Plus/Plus

Query  3    AAAGAGTAA-GAGATGGGTGATGGGCTTGATATCACAGTTGGAAGATGGACATTTCTACC  61
            |||| | || || ||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct  548  AAAGGGGAAGGAAATGGGTGATGGGAGTGATATCACAGTTGGAAGATGGACATTTCTACC  607

Query  62   TTGAATACCTTTCAGCTTGTGTAAAGATTGATTTGTCCAAAGCAA  106
            | ||| |||||||||||| |||| |||||||| ||||||||||||
Sbjct  608  TGGAAGACCTTTCAGCTTCTGTAGAGATTGATCTGTCCAAAGCAA  652


> AT2G31625.1 | Symbols:  | unknown pseudogene | chr2:13453331-13455235 
REVERSE LENGTH=1001
Length=1001

 Score =  200 bits (108),  Expect = 2e-50
 Identities = 131/142 (92%), Gaps = 2/142 (1%)
 Strand=Plus/Plus

Query  850   ATAGTATTAGGTGACAAGAGTGA-CAAAAAGGTATGCAAATTTGGGGGAGCAACATGTTT  908
             ||| ||||||||||||||||||| | |||| ||||||||||||||||||| || ||||||
Sbjct  861   ATATTATTAGGTGACAAGAGTGAGC-AAAACGTATGCAAATTTGGGGGAGAAATATGTTT  919

Query  909   TAATCCAGGCTCCTTTTCAACTGATAGCACCTTTGTAGCTTATCGGCCTTCCACTCAAGA  968
              |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct  920   CAATCCAGGCTCCTTTTCAACTGATAGCACCTTCGTAGCTTATCGACCTTCCACTCAAGA  979

Query  969   AATCGAACTCTCTCCTCTGTGA  990
             | ||||||||||| ||||||||
Sbjct  980   AGTCGAACTCTCTGCTCTGTGA  1001


 Score =  176 bits (95),  Expect = 4e-43
 Identities = 261/334 (78%), Gaps = 40/334 (12%)
 Strand=Plus/Plus

Query  453  CTCATTATATCCGACACGTCCCTTGACAGTCTTGCCAAGATGCGGTTTACCAGAGTATTC  512
            |||||||| |  |||| ||| || ||||||||||||||||||||||||||||||||||| 
Sbjct  499  CTCATTATCTGTGACAGGTCTCTCGACAGTCTTGCCAAGATGCGGTTTACCAGAGTATTT  558

Query  513  AACCGAAGAGCTTCGAGAAGTTATTCCCAATGC--GATATTT-TCAA--GCA-A-TCC--  563
            |||||||||||||||||| |||||| ||||| |  | ||||| | ||  ||| | |    
Sbjct  559  AACCGAAGAGCTTCGAGATGTTATTACCAAT-CTTG-TATTTGTAAAATGCAGAGTAAAG  616

Query  564  TTG--CA----GGAGATTGTGTTCTTCCGACAAGACCTTGTGGTACCGGATGAGCCGTTC  617
            ||   ||    ||||||||||||||||||||| || ||| |  ||| | |||||||||||
Sbjct  617  TTCTACAACAAGGAGATTGTGTTCTTCCGACACGAGCTTCTA-TACAGAATGAGCCGTTC  675

Query  618  ACGCTTGTTAAAACCTTCCTCAGAAGAAACTAATGACCC----------C----TT-TGA  662
            | ||||  |||  ||||||| | ||||||||||||||||          |    || |||
Sbjct  676  ATGCTTAATAACCCCTTCCTGAAAAGAAACTAATGACCCATTTTATTTTCCAACTTCTGA  735

Query  663  ----ACACCTTGTCTCCAAATTAATTCATCAGAGCCATCTATGTCCTCTACCTCTCTTGT  718
                |||| ||||||||| |||||||||||||||||||||||||  |||| |||||||| 
Sbjct  736  TTTTACAC-TTGTCTCCACATTAATTCATCAGAGCCATCTATGTTATCTAACTCTCTTGG  794

Query  719  TTCAAC-CAATAATTTGGAACTATGATCACTGTC  751
            |||||| || | |||||||||||||| |||||||
Sbjct  795  TTCAACACA-TCATTTGGAACTATGACCACTGTC  827



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49480634795


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5