BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933714
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31680.1 | Symbols: AtRABA5d, RABA5d | RAB GTPase homolog A5... 1072 0.0
AT1G06400.1 | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-re... 110 3e-23
AT5G45750.1 | Symbols: AtRABA1c, RABA1c | RAB GTPase homolog A1... 76.8 3e-13
> AT2G31680.1 | Symbols: AtRABA5d, RABA5d | RAB GTPase homolog
A5D | chr2:13473594-13475052 REVERSE LENGTH=942
Length=942
Score = 1072 bits (580), Expect = 0.0
Identities = 647/680 (95%), Gaps = 2/680 (0%)
Strand=Plus/Plus
Query 8 AGAAATCAGaaaaaaaCGATGTCGTCCGATGACGAAGGAGGAGAGGAGTATCTCTTCAAG 67
||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 80 AGAAA-CA-AAAAAAACGATGTCGTCCGATGACGAAGGAGGAGAAGAGTATCTATTCAAG 137
Query 68 ATAGTGATCATCGGCGACTCTGCCGTCGGGAAATCGAACCTTCTCTCTCGCTACGCTCGT 127
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 138 ATAGTGATAATCGGCGACTCTGCCGTCGGGAAATCGAACCTTCTCTCTCGCTATGCTCGT 197
Query 128 AACGAGTTCAACGCTCATTCCAAAGCCACGATCGGCGTCGAGTTCCAAACGCAAAACATG 187
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||
Sbjct 198 AACGAGTTCAACGCTCATTCCAAGGCCACGATCGGCGTCGAGTTCCAGACGCAGAATATG 257
Query 188 GAGATCGAAGGAAAAGAGGTTAAAGCTCAGATTTGGGATACTGCTGGTCAGGAACGGTTC 247
|| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 258 GAAATCGAAGGTAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAACGGTTT 317
Query 248 CGTGCCGTCACTTCCGCTTATTATCGCGGCGCCGTCGGAGCTCTCGTCGTTTACGATATT 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 CGTGCCGTCACTTCCGCTTATTATCGCGGCGCCGTCGGAGCTCTCGTCGTTTACGATATT 377
Query 308 AGCCGTCGATCCACGTTTGAGAGCGTTGGTCGTTGGCTTGATGAGCTTAAGACACATTCG 367
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 378 AGTCGTCGATCCACGTTTGAGAGTGTTGGTCGTTGGCTTGATGAGCTCAAGACACATTCG 437
Query 368 GATACAACAGTTGCGAGGATGCTGGTGGGAAACAAATGCGATCTAGAAAGCATAAGAGCG 427
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GATACAACGGTTGCGAGGATGCTGGTGGGAAACAAATGCGATCTAGAAAGCATAAGAGCG 497
Query 428 GTGAGCGTGGAGGAAGGCAAAGCACTAGCGGAAACCGAAGGACTATTCTTCATGGAAACA 487
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 498 GTGAGCGTGGAAGAAGGCAAAGCACTAGCTGAAACCGAAGGACTATTTTTCATGGAAACA 557
Query 488 TCAGCTCTCGATTCAACAAATGTTAAAACAGCTTTTGAAATGGTAATCCGTGACATCTAC 547
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 558 TCAGCTCTCGATTCAACAAATGTTAAAACAGCTTTCGAAATGGTAATCCGTGACATCTAT 617
Query 548 ACCAATGTTAGCCGGAAACAACTCAATTCCGACACTTATAAAACCGAACTAAGCATGAAG 607
|||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 618 ACCAATATAAGCCGGAAACAACTCAACTCCGACACTTATAAAACCGAACTAAGCATGAAA 677
Query 608 AACCGAGTAAGTCTCGTTAAGGACGATAACAAAGGGTCCACACAAGGCTTTGGTTTCTCT 667
||| |||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 678 AACAGAGTCAGTCTCGTTAAGGACGATAATAAAAGCTCCACACAAGGCTTTGGTTTCTCT 737
Query 668 TGCTGTTCTTCCTCGTGACC 687
||||||||||||||||||||
Sbjct 738 TGCTGTTCTTCCTCGTGACC 757
> AT1G06400.1 | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-related
small GTP-binding family protein | chr1:1950844-1952785
REVERSE LENGTH=995
Length=995
Score = 110 bits (59), Expect = 3e-23
Identities = 146/186 (78%), Gaps = 14/186 (8%)
Strand=Plus/Plus
Query 59 CTCTTCAAGATAGTGATCATCGGCGACTCTGCCGTCGGGAAATCGAACCTTCTCTCTC-G 117
||||||||| | ||| | ||||||||||||| ||||| |||||||| || ||||||| |
Sbjct 136 CTCTTCAAGCTCGTGTTGATCGGCGACTCTGGTGTCGGCAAATCGAATCTGCTCTCTCGG 195
Query 118 CT-ACGCTCGTAACGAGTTCAACGCTC-ATTCCAAAG-CCACGATCGGCGTCGAGTTC-C 173
| || | | ||||||||||| ||| | ||| ||| | || || || || |||||| |
Sbjct 196 TTCAC-CAAG-AACGAGTTCAA-TCTCGAATCC-AAGTCTACTATTGGTGTTGAGTTCGC 251
Query 174 AAACGCAAAA-CA-TGGAGATCGAAGGAAAAGAGGTTAAAGCTCAGATTTGGGATACTGC 231
|| ||||| || | || ||||||| |||| || |||||||||||||||||||||||
Sbjct 252 -TAC-CAAAACCACTAAAG-TCGAAGGCAAAGTCGTCAAAGCTCAGATTTGGGATACTGC 308
Query 232 TGGTCA 237
||||||
Sbjct 309 TGGTCA 314
> AT5G45750.1 | Symbols: AtRABA1c, RABA1c | RAB GTPase homolog
A1C | chr5:18559116-18560842 FORWARD LENGTH=1056
Length=1056
Score = 76.8 bits (41), Expect = 3e-13
Identities = 108/140 (77%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 209 AAAGCTCAGATTTGGGATACTGCTGGTCAGGAACGGTTCCGTGCCGTCACTTCCGCTTAT 268
||||||||||||||||||||||||||||| ||| ||| ||| ||| ||||| || |||
Sbjct 389 AAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTACCGAGCCATCACTAGTGCGTAT 448
Query 269 TATCGCGGCGCCGTCGGAGCTCT-CGTCGTTTACGATATTAGCCGTCGA-TCCACGTTTG 326
|| || || || || ||||| || | | || |||||| | | ||| | | || || ||||
Sbjct 449 TACCGAGGAGCTGTTGGAGCGCTTCTT-GTCTACGATGTAACCCGAC-ACTCAACATTTG 506
Query 327 AGAGCGTTG-GTCGTTGGCT 345
| | ||||| | | ||||||
Sbjct 507 AAAACGTTGAGAC-TTGGCT 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5