BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933719 Length=1186 Score E Sequences producing significant alignments: (Bits) Value AT2G31720.1 | Symbols: | Domain of unknown function (DUF313) ... 510 1e-143 AT2G31862.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 451 6e-126 AT2G18810.1 | Symbols: | Domain of unknown function (DUF313) ... 289 5e-77 > AT2G31720.1 | Symbols: | Domain of unknown function (DUF313) | chr2:13485034-13485975 REVERSE LENGTH=942 Length=942 Score = 510 bits (276), Expect = 1e-143 Identities = 494/595 (83%), Gaps = 31/595 (5%) Strand=Plus/Plus Query 21 ATGGAGGGAGGTGATGATCAACTCAA-GCGTTTGCAGAGAGAGAAGAGATTATTAAATAT 79 |||| | |||| ||||||||||| || | |||||||| ||| ||||||| ||| |||| Sbjct 1 ATGGTGAGAGGAGATGATCAACTTAATG-GTTTGCAGGGAGGGAAGAGAGCGTTAGATAT 59 Query 80 TTTGTCTGTTGGC-ACGGAGAGAATGGTTAGAGCTTTTAGC-TATGAGGATAA-CGGAGA 136 ||| | || | || |||||||||| |||||| |||||| || |||||||| || ||||| Sbjct 60 TTTATGTG-TAGCGACGGAGAGAACGGTTAGCGCTTTT-GCATATGAGGA-AATAGGAGA 116 Query 137 AACATCCACTGAAGGTCATGCTA-GTGTGA-AGAATAAAAAGAGAGAGAGAAGCGA-T-A 192 |||||||||||||||| || | | | || ||| | | | ||| ||||| || | | Sbjct 117 AACATCCACTGAAGGTGATAAAAGGAGGGAGAGACT-GAGA-AGACTGAGAA--GATTAA 172 Query 193 TTAACAACGGTCTAAGGAGCACAACGACG-ATCTCCAGATTGAGCAAACGACTGAAGATT 251 |||| || |||| ||||||||| | | || ||||| ||||||||||||||||||||| Sbjct 173 TTAATTACAGTCT---GAGCACAACTATGAAT-TCCAGCTTGAGCAAACGACTGAAGATT 228 Query 252 GATGAGTGCGAGAATCAAGACCCGAAACAAAACCCTAATCTTCATGCTTCTTCTCCAAGT 311 ||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||||| Sbjct 229 GATGAGTGCAAGAATCAAGACCCGGAACAAAACCCTAATCGTGTTGCTTCTTCTCCAAGT 288 Query 312 TTGTGCCATGTAGCGACCAAGAGGCCTCAAAAAGTGGTTTCAAACAAATCGGTAAGACGA 371 | ||||||| ||| | |||||||||||||||||||||||||||||||| |||||||| | Sbjct 289 TCGTGCCATCTAGAGTCCAAGAGGCCTCAAAAAGTGGTTTCAAACAAACCGGTAAGAA-A 347 Query 372 -AGAAAGCCGGTTAGAGTTATAGTGACGGATGAAGATAGGACGCCGCCGGAATGGCTGGT 430 ||||||||||||| | | ||||| |||||||||||||| ||| ||||||||||| | Sbjct 348 CAGAAAGCCGGTTA---T-A--GTGACAGATGAAGATAGGACACCGACGGAATGGCTGAT 401 Query 431 CAACATGATGAGAGAAAAGAACAGTGTGGATGCAAAGCTGATATTTGTCAAGGTTCTTAC 490 || ||||||||||| |||| || |||||||||||||||||||||| ||||||||| | Sbjct 402 TGACGTGATGAGAGAAGTGAACGGTATGGATGCAAAGCTGATATTTGTGAAGGTTCTTCC 461 Query 491 CAATAGTGATGTTGACAAAGGTCAGACACGTCTCT-TGATGCCCTGGAACCAGATACTGG 549 |||||||||||| ||| || |||||||||||| | ||||||||||||| |||||||| | Sbjct 462 CAATAGTGATGTCGACGAACTTCAGACACGTCT-TATGATGCCCTGGAAGCAGATACTAG 520 Query 550 ATATGGGCTTCTTAAACAAGGAAGAGTTAGGAATGATAGATaaacattacaaaaa 604 |||||| |||||||||| |||||||||||| || ||||||| |||| ||||||| Sbjct 521 ATATGGACTTCTTAAACGAGGAAGAGTTAGAAAAAATAGATAGACATCACAAAAA 575 Score = 254 bits (137), Expect = 2e-66 Identities = 217/254 (85%), Gaps = 11/254 (4%) Strand=Plus/Plus Query 626 acattacaaaaaGATTAGTGATTGTGACAAAGGAGCGGATGTGATCTTGGTGAGTTCTGA 685 |||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||| | Sbjct 564 ACATCACAAAAAGATTAGTGCCAGTGACAAAGGAGCGGATGTGATCGTGGTGAATTCTAA 623 Query 686 GGGTC-A-ACA-GAAGCTTAAGCTCAAGAGATGGGATATGAGTTCCACTTCCAACTACGC 742 ||||| | | | ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 624 GGGTCTACAGAGGAAGCTTAAGCTCAAGAGATGGGATATGACTTCCACTTCCAACTACGT 683 Query 743 CTTGGGTTCAGGATGGAACAAGGTCGTCGCCGGTAACAGTCTAGAGAAAGGC-CAGAGGA 801 ||| |||| ||||||||||||||||||| ||| ||||| |||| ||| |||| | ||| Sbjct 684 CTTAGGTTTAGGATGGAACAAGGTCGTCACCGATAACATTCTACAGAGAGGCACT-AGGC 742 Query 802 TTCGGGTCTGGTCCTTCCACTCCCTAGACAAGCTCTATATT-GCTCTA-GTTCTT-CTGG 858 ||||| |||||||||||||||||| ||||| ||||| | || || || |||||| | | Sbjct 743 TTCGGATCTGGTCCTTCCACTCCCCAGACATGCTCTTT-TTCGC-CTTCGTTCTTTCAG- 799 Query 859 ATCCAGCTCCAGCT 872 |||||| ||||||| Sbjct 800 ATCCAGATCCAGCT 813 Score = 148 bits (80), Expect = 9e-35 Identities = 109/123 (89%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1044 GAGTGCCTAAATTTATTTGCTGAAGTGCCCGAGGAGAC-AATTCGTCTCGAGGCTCTACA 1102 ||||||||||||||||| ||| || || ||||||||| | || ||||||||||| |||| Sbjct 820 GAGTGCCTAAATTTATTGGCTAAATTGTGCGAGGAGACGACTT-GTCTCGAGGCTTTACA 878 Query 1103 GGAGGCAAATAGGAGGAGGTCACTGGTCTCCGACACAGAGCTGGACCTCGAGCTCCGGTT 1162 ||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||| Sbjct 879 AGAGGCAAATAGGATGAGCTCACTCGTCTCGGACACAGAGCTGGACCTCGAGCTCCGGTT 938 Query 1163 GTA 1165 ||| Sbjct 939 GTA 941 > AT2G31862.1 | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT2G31720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:13545549-13546464 FORWARD LENGTH=916 Length=916 Score = 451 bits (244), Expect = 6e-126 Identities = 403/475 (85%), Gaps = 30/475 (6%) Strand=Plus/Plus Query 697 AGCTTAAGCTCAAGAGATGGGATATGAGTTCCACTTCCAACTACGCCTTGGGTTCAGGAT 756 ||||||| |||| ||||||| ||||||| |||||||||| |||| ||||| |||| ||| Sbjct 271 AGCTTAATCTCAGGAGATGGAATATGAGGTCCACTTCCATTTACGTCTTGGCTTCAAGAT 330 Query 757 GGAACAAGGTCGTCGCCGGTAACAGTCT-AGAGAAAGGCCAGAGGATTCGGGTCTGGTCC 815 |||| ||||||||| ||| ||||| ||| | | ||||||||||||||||| |||||||| Sbjct 331 GGAAAAAGGTCGTCTCCGATAACACTCTAATTG-AAGGCCAGAGGATTCGGCTCTGGTCC 389 Query 816 TTCCACTCCCTAGACAAGCTCTATATTGCTCTAGTTCTTCTGGATCCAGCTCCAGCTACA 875 ||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||| | Sbjct 390 TTCCACTCCCTAGCCAAGCTATATATTGCTCTTGTTCCTCTGGATCCAGCTCCAG---C- 445 Query 876 GATCCAACACCAGCTCCGGCTATCCCTCTGATTCCAGATCCAGCTCCATCTTCACCTCCG 935 | | || | ||| |||||||| |||| ||||| |||| ||||||| | | || Sbjct 446 --T-C--CA--A-CTCTGGCTATCCTTCTGGCTCCAGCTCCAACTCCATC-T----T-CG 491 Query 936 GCTCCGGTTGTTACTAGAGATTCTGACGAGCTATATATATCTCAAGCTGAGGCTCAAGAA 995 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 492 CCTCCGGTTGTTACTAGAGATTCTGACGAGCTATATATATCTCATGCTGATGCTCAAGAA 551 Query 996 GAGAGTGACATAATACTTCCAGTTCCAGTCCCTGCAGATAAAGATTGGGAGTGCCTAAAT 1055 ||| |||||| |||||||||||||| | | |||||||| |||||||||||||||||| Sbjct 552 GAGGGTGACAGAATACTTCCAGTTC-A-T----GCAGATAATGATTGGGAGTGCCTAAAT 605 Query 1056 TTATTTGCTGAAGTGCCCGAGGAGACAA-TTCGTCTCGAGGCT-CTACAGGAGGCAAATA 1113 ||||| ||| ||||| |||||||||| | || ||||||||| | | ||| |||||||||| Sbjct 606 TTATTGGCTAAAGTGTCCGAGGAGACGACTT-GTCTCGAGGTTTC-ACAAGAGGCAAATA 663 Query 1114 GGAGGAGGTCACTGGTCTCCGACACAGAGCTGGACCTCGAGCTCCGGTTGTAACT 1168 ||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||| Sbjct 664 GGAGGAGCTCACTAGTCTCGGACACAGAGCTGGACCTCGAGCTCCGGTTGTCACT 718 > AT2G18810.1 | Symbols: | Domain of unknown function (DUF313) | chr2:8147939-8149469 REVERSE LENGTH=705 Length=705 Score = 289 bits (156), Expect = 5e-77 Identities = 233/268 (87%), Gaps = 14/268 (5%) Strand=Plus/Plus Query 102 ATGGTTAGAGCTTTTAGC-TATGAGGATAA-CGGAGAAACATCCACTGAAGGTCATGCTA 159 ||||||||||||||| || |||||||| || ||||||||||||||||||| |||||||| Sbjct 1 ATGGTTAGAGCTTTT-GCATATGAGGA-AATAGGAGAAACATCCACTGAAGCTCATGCTA 58 Query 160 GTGT-GAAGAATAA-AA-AGAG--AG-A-GAGAAGCGAT-ATTAACAACGGTCTAAGGAG 211 |||| | || |||| || |||| || | |||||| | | ||||| || ||||||||| Sbjct 59 GTGTCG-AGGATAATAAGAGAGATAGAACGAGAAGAG-TAATTAATTACAATCTAAGGAG 116 Query 212 CACAACGACGATCTCCAGATTGAGCAAACGACTGAAGATTGATGAGTGCGAGAATCAAGA 271 |||||||| ||| ||||| |||||||||||| ||||||||||||||||| |||||||||| Sbjct 117 CACAACGATGATTTCCAGCTTGAGCAAACGATTGAAGATTGATGAGTGCAAGAATCAAGA 176 Query 272 CCCGAAACAAAACCCTAATCTTCATGCTTCTTCTCCAAGTTTGTGCCATGTAGCGACCAA 331 |||| ||||||||||||||| | |||||||||||||||||||||||||||| | |||| Sbjct 177 CCCGGAACAAAACCCTAATCGTGTTGCTTCTTCTCCAAGTTTGTGCCATGTAAAGTCCAA 236 Query 332 GAGGCCTCAAAAAGTGGTTTCAAACAAA 359 |||||||||||||| ||||||||||||| Sbjct 237 GAGGCCTCAAAAAGGGGTTTCAAACAAA 264 Score = 276 bits (149), Expect = 4e-73 Identities = 220/253 (87%), Gaps = 9/253 (4%) Strand=Plus/Plus Query 626 acattacaaaaaGATTAGTGATTGTGACAAAGGAGCGGATGTGATCTTGGTGAGTTCTGA 685 ||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| || Sbjct 318 ACATTACAAAAAGATAAGTGACAGTGACAAAGGAGCGGATGTGATCTTGGTGAATTCCGA 377 Query 686 GGGTCAACAGA--A-GCTTAAGCTCAAGAGATGGGATATGAGTTCCACTTCCAACTACGC 742 ||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 378 GGGTCTACAGAGGAAGCTTAAGCTCAAGAGATGGGATATGACTTCCACTTCCAACTACGT 437 Query 743 CTTGGGTTCAGGATGGAACAAGGTCGTCGCCGGTAACAGTCTAGAGAAAGGC-CAGAGGA 801 ||| |||||||||||||||||||||||| ||| |||| |||||||| |||| | |||| Sbjct 438 CTTAGGTTCAGGATGGAACAAGGTCGTCACCGAAAACATTCTAGAGACAGGCAC-GAGGC 496 Query 802 TTCGGGTCTGGTCCTTCCACTCCCTAGACAAGCTCTATATT-GCTCTAGTTCTT-CTGGA 859 ||||| |||||||||||||||||| ||||| ||||| | || || || |||||| | | | Sbjct 497 TTCGGCTCTGGTCCTTCCACTCCCCAGACATGCTCTTT-TTCGCCCTCGTTCTTTCAG-A 554 Query 860 TCCAGCTCCAGCT 872 ||||| || |||| Sbjct 555 TCCAGATCTAGCT 567 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58232632200 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5