BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933719
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31720.1 | Symbols: | Domain of unknown function (DUF313) ... 510 1e-143
AT2G31862.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 451 6e-126
AT2G18810.1 | Symbols: | Domain of unknown function (DUF313) ... 289 5e-77
> AT2G31720.1 | Symbols: | Domain of unknown function (DUF313)
| chr2:13485034-13485975 REVERSE LENGTH=942
Length=942
Score = 510 bits (276), Expect = 1e-143
Identities = 494/595 (83%), Gaps = 31/595 (5%)
Strand=Plus/Plus
Query 21 ATGGAGGGAGGTGATGATCAACTCAA-GCGTTTGCAGAGAGAGAAGAGATTATTAAATAT 79
|||| | |||| ||||||||||| || | |||||||| ||| ||||||| ||| ||||
Sbjct 1 ATGGTGAGAGGAGATGATCAACTTAATG-GTTTGCAGGGAGGGAAGAGAGCGTTAGATAT 59
Query 80 TTTGTCTGTTGGC-ACGGAGAGAATGGTTAGAGCTTTTAGC-TATGAGGATAA-CGGAGA 136
||| | || | || |||||||||| |||||| |||||| || |||||||| || |||||
Sbjct 60 TTTATGTG-TAGCGACGGAGAGAACGGTTAGCGCTTTT-GCATATGAGGA-AATAGGAGA 116
Query 137 AACATCCACTGAAGGTCATGCTA-GTGTGA-AGAATAAAAAGAGAGAGAGAAGCGA-T-A 192
|||||||||||||||| || | | | || ||| | | | ||| ||||| || | |
Sbjct 117 AACATCCACTGAAGGTGATAAAAGGAGGGAGAGACT-GAGA-AGACTGAGAA--GATTAA 172
Query 193 TTAACAACGGTCTAAGGAGCACAACGACG-ATCTCCAGATTGAGCAAACGACTGAAGATT 251
|||| || |||| ||||||||| | | || ||||| |||||||||||||||||||||
Sbjct 173 TTAATTACAGTCT---GAGCACAACTATGAAT-TCCAGCTTGAGCAAACGACTGAAGATT 228
Query 252 GATGAGTGCGAGAATCAAGACCCGAAACAAAACCCTAATCTTCATGCTTCTTCTCCAAGT 311
||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||||||
Sbjct 229 GATGAGTGCAAGAATCAAGACCCGGAACAAAACCCTAATCGTGTTGCTTCTTCTCCAAGT 288
Query 312 TTGTGCCATGTAGCGACCAAGAGGCCTCAAAAAGTGGTTTCAAACAAATCGGTAAGACGA 371
| ||||||| ||| | |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 289 TCGTGCCATCTAGAGTCCAAGAGGCCTCAAAAAGTGGTTTCAAACAAACCGGTAAGAA-A 347
Query 372 -AGAAAGCCGGTTAGAGTTATAGTGACGGATGAAGATAGGACGCCGCCGGAATGGCTGGT 430
||||||||||||| | | ||||| |||||||||||||| ||| ||||||||||| |
Sbjct 348 CAGAAAGCCGGTTA---T-A--GTGACAGATGAAGATAGGACACCGACGGAATGGCTGAT 401
Query 431 CAACATGATGAGAGAAAAGAACAGTGTGGATGCAAAGCTGATATTTGTCAAGGTTCTTAC 490
|| ||||||||||| |||| || |||||||||||||||||||||| ||||||||| |
Sbjct 402 TGACGTGATGAGAGAAGTGAACGGTATGGATGCAAAGCTGATATTTGTGAAGGTTCTTCC 461
Query 491 CAATAGTGATGTTGACAAAGGTCAGACACGTCTCT-TGATGCCCTGGAACCAGATACTGG 549
|||||||||||| ||| || |||||||||||| | ||||||||||||| |||||||| |
Sbjct 462 CAATAGTGATGTCGACGAACTTCAGACACGTCT-TATGATGCCCTGGAAGCAGATACTAG 520
Query 550 ATATGGGCTTCTTAAACAAGGAAGAGTTAGGAATGATAGATaaacattacaaaaa 604
|||||| |||||||||| |||||||||||| || ||||||| |||| |||||||
Sbjct 521 ATATGGACTTCTTAAACGAGGAAGAGTTAGAAAAAATAGATAGACATCACAAAAA 575
Score = 254 bits (137), Expect = 2e-66
Identities = 217/254 (85%), Gaps = 11/254 (4%)
Strand=Plus/Plus
Query 626 acattacaaaaaGATTAGTGATTGTGACAAAGGAGCGGATGTGATCTTGGTGAGTTCTGA 685
|||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||| |
Sbjct 564 ACATCACAAAAAGATTAGTGCCAGTGACAAAGGAGCGGATGTGATCGTGGTGAATTCTAA 623
Query 686 GGGTC-A-ACA-GAAGCTTAAGCTCAAGAGATGGGATATGAGTTCCACTTCCAACTACGC 742
||||| | | | ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 624 GGGTCTACAGAGGAAGCTTAAGCTCAAGAGATGGGATATGACTTCCACTTCCAACTACGT 683
Query 743 CTTGGGTTCAGGATGGAACAAGGTCGTCGCCGGTAACAGTCTAGAGAAAGGC-CAGAGGA 801
||| |||| ||||||||||||||||||| ||| ||||| |||| ||| |||| | |||
Sbjct 684 CTTAGGTTTAGGATGGAACAAGGTCGTCACCGATAACATTCTACAGAGAGGCACT-AGGC 742
Query 802 TTCGGGTCTGGTCCTTCCACTCCCTAGACAAGCTCTATATT-GCTCTA-GTTCTT-CTGG 858
||||| |||||||||||||||||| ||||| ||||| | || || || |||||| | |
Sbjct 743 TTCGGATCTGGTCCTTCCACTCCCCAGACATGCTCTTT-TTCGC-CTTCGTTCTTTCAG- 799
Query 859 ATCCAGCTCCAGCT 872
|||||| |||||||
Sbjct 800 ATCCAGATCCAGCT 813
Score = 148 bits (80), Expect = 9e-35
Identities = 109/123 (89%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1044 GAGTGCCTAAATTTATTTGCTGAAGTGCCCGAGGAGAC-AATTCGTCTCGAGGCTCTACA 1102
||||||||||||||||| ||| || || ||||||||| | || ||||||||||| ||||
Sbjct 820 GAGTGCCTAAATTTATTGGCTAAATTGTGCGAGGAGACGACTT-GTCTCGAGGCTTTACA 878
Query 1103 GGAGGCAAATAGGAGGAGGTCACTGGTCTCCGACACAGAGCTGGACCTCGAGCTCCGGTT 1162
||||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 879 AGAGGCAAATAGGATGAGCTCACTCGTCTCGGACACAGAGCTGGACCTCGAGCTCCGGTT 938
Query 1163 GTA 1165
|||
Sbjct 939 GTA 941
> AT2G31862.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF313) (TAIR:AT2G31720.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:13545549-13546464
FORWARD LENGTH=916
Length=916
Score = 451 bits (244), Expect = 6e-126
Identities = 403/475 (85%), Gaps = 30/475 (6%)
Strand=Plus/Plus
Query 697 AGCTTAAGCTCAAGAGATGGGATATGAGTTCCACTTCCAACTACGCCTTGGGTTCAGGAT 756
||||||| |||| ||||||| ||||||| |||||||||| |||| ||||| |||| |||
Sbjct 271 AGCTTAATCTCAGGAGATGGAATATGAGGTCCACTTCCATTTACGTCTTGGCTTCAAGAT 330
Query 757 GGAACAAGGTCGTCGCCGGTAACAGTCT-AGAGAAAGGCCAGAGGATTCGGGTCTGGTCC 815
|||| ||||||||| ||| ||||| ||| | | ||||||||||||||||| ||||||||
Sbjct 331 GGAAAAAGGTCGTCTCCGATAACACTCTAATTG-AAGGCCAGAGGATTCGGCTCTGGTCC 389
Query 816 TTCCACTCCCTAGACAAGCTCTATATTGCTCTAGTTCTTCTGGATCCAGCTCCAGCTACA 875
||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||| |
Sbjct 390 TTCCACTCCCTAGCCAAGCTATATATTGCTCTTGTTCCTCTGGATCCAGCTCCAG---C- 445
Query 876 GATCCAACACCAGCTCCGGCTATCCCTCTGATTCCAGATCCAGCTCCATCTTCACCTCCG 935
| | || | ||| |||||||| |||| ||||| |||| ||||||| | | ||
Sbjct 446 --T-C--CA--A-CTCTGGCTATCCTTCTGGCTCCAGCTCCAACTCCATC-T----T-CG 491
Query 936 GCTCCGGTTGTTACTAGAGATTCTGACGAGCTATATATATCTCAAGCTGAGGCTCAAGAA 995
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 492 CCTCCGGTTGTTACTAGAGATTCTGACGAGCTATATATATCTCATGCTGATGCTCAAGAA 551
Query 996 GAGAGTGACATAATACTTCCAGTTCCAGTCCCTGCAGATAAAGATTGGGAGTGCCTAAAT 1055
||| |||||| |||||||||||||| | | |||||||| ||||||||||||||||||
Sbjct 552 GAGGGTGACAGAATACTTCCAGTTC-A-T----GCAGATAATGATTGGGAGTGCCTAAAT 605
Query 1056 TTATTTGCTGAAGTGCCCGAGGAGACAA-TTCGTCTCGAGGCT-CTACAGGAGGCAAATA 1113
||||| ||| ||||| |||||||||| | || ||||||||| | | ||| ||||||||||
Sbjct 606 TTATTGGCTAAAGTGTCCGAGGAGACGACTT-GTCTCGAGGTTTC-ACAAGAGGCAAATA 663
Query 1114 GGAGGAGGTCACTGGTCTCCGACACAGAGCTGGACCTCGAGCTCCGGTTGTAACT 1168
||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 664 GGAGGAGCTCACTAGTCTCGGACACAGAGCTGGACCTCGAGCTCCGGTTGTCACT 718
> AT2G18810.1 | Symbols: | Domain of unknown function (DUF313)
| chr2:8147939-8149469 REVERSE LENGTH=705
Length=705
Score = 289 bits (156), Expect = 5e-77
Identities = 233/268 (87%), Gaps = 14/268 (5%)
Strand=Plus/Plus
Query 102 ATGGTTAGAGCTTTTAGC-TATGAGGATAA-CGGAGAAACATCCACTGAAGGTCATGCTA 159
||||||||||||||| || |||||||| || ||||||||||||||||||| ||||||||
Sbjct 1 ATGGTTAGAGCTTTT-GCATATGAGGA-AATAGGAGAAACATCCACTGAAGCTCATGCTA 58
Query 160 GTGT-GAAGAATAA-AA-AGAG--AG-A-GAGAAGCGAT-ATTAACAACGGTCTAAGGAG 211
|||| | || |||| || |||| || | |||||| | | ||||| || |||||||||
Sbjct 59 GTGTCG-AGGATAATAAGAGAGATAGAACGAGAAGAG-TAATTAATTACAATCTAAGGAG 116
Query 212 CACAACGACGATCTCCAGATTGAGCAAACGACTGAAGATTGATGAGTGCGAGAATCAAGA 271
|||||||| ||| ||||| |||||||||||| ||||||||||||||||| ||||||||||
Sbjct 117 CACAACGATGATTTCCAGCTTGAGCAAACGATTGAAGATTGATGAGTGCAAGAATCAAGA 176
Query 272 CCCGAAACAAAACCCTAATCTTCATGCTTCTTCTCCAAGTTTGTGCCATGTAGCGACCAA 331
|||| ||||||||||||||| | |||||||||||||||||||||||||||| | ||||
Sbjct 177 CCCGGAACAAAACCCTAATCGTGTTGCTTCTTCTCCAAGTTTGTGCCATGTAAAGTCCAA 236
Query 332 GAGGCCTCAAAAAGTGGTTTCAAACAAA 359
|||||||||||||| |||||||||||||
Sbjct 237 GAGGCCTCAAAAAGGGGTTTCAAACAAA 264
Score = 276 bits (149), Expect = 4e-73
Identities = 220/253 (87%), Gaps = 9/253 (4%)
Strand=Plus/Plus
Query 626 acattacaaaaaGATTAGTGATTGTGACAAAGGAGCGGATGTGATCTTGGTGAGTTCTGA 685
||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||
Sbjct 318 ACATTACAAAAAGATAAGTGACAGTGACAAAGGAGCGGATGTGATCTTGGTGAATTCCGA 377
Query 686 GGGTCAACAGA--A-GCTTAAGCTCAAGAGATGGGATATGAGTTCCACTTCCAACTACGC 742
||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 378 GGGTCTACAGAGGAAGCTTAAGCTCAAGAGATGGGATATGACTTCCACTTCCAACTACGT 437
Query 743 CTTGGGTTCAGGATGGAACAAGGTCGTCGCCGGTAACAGTCTAGAGAAAGGC-CAGAGGA 801
||| |||||||||||||||||||||||| ||| |||| |||||||| |||| | ||||
Sbjct 438 CTTAGGTTCAGGATGGAACAAGGTCGTCACCGAAAACATTCTAGAGACAGGCAC-GAGGC 496
Query 802 TTCGGGTCTGGTCCTTCCACTCCCTAGACAAGCTCTATATT-GCTCTAGTTCTT-CTGGA 859
||||| |||||||||||||||||| ||||| ||||| | || || || |||||| | | |
Sbjct 497 TTCGGCTCTGGTCCTTCCACTCCCCAGACATGCTCTTT-TTCGCCCTCGTTCTTTCAG-A 554
Query 860 TCCAGCTCCAGCT 872
||||| || ||||
Sbjct 555 TCCAGATCTAGCT 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58232632200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5