BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933725
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31780.1 | Symbols: ATARI11, ARI11 | RING/U-box superfamily ... 1256 0.0
AT2G31770.1 | Symbols: ARI9, ATARI9 | RING/U-box superfamily pr... 843 0.0
AT2G31760.1 | Symbols: ARI10, ATARI10 | RING/U-box superfamily ... 743 0.0
AT1G63760.1 | Symbols: ARI6, ATARI6 | pseudogene, ARI protein, ... 178 2e-43
> AT2G31780.1 | Symbols: ATARI11, ARI11 | RING/U-box superfamily
protein | chr2:13515199-13517413 FORWARD LENGTH=1603
Length=1603
Score = 1256 bits (680), Expect = 0.0
Identities = 872/962 (91%), Gaps = 24/962 (2%)
Strand=Plus/Plus
Query 513 GATAAGGAGAAATATCATAGATATCTTCTTAGGTCTTATGTCGAAGAAGGGAAGAAGATT 572
|||||||| || ||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct 616 GATAAGGACAAGTATTATAGATATTTTCTTAGGTCTTATGTCGAAGACGGGAAGAAGATG 675
Query 573 AAATGGTGTCCATCACCGGGATGCGAATATGCTATTGAATTTGGTGGAAGTGGAAGTAGT 632
||||||||||||||||||||||||||||| || |||||||||||| || ||||||||||
Sbjct 676 AAATGGTGTCCATCACCGGGATGCGAATACGCGGTTGAATTTGGTGTAAATGGAAGTAGT 735
Query 633 AGTTACGATGTTTCTTGTTTGTGTTCGTATAGGTTCTGCTGGAATTGCTGTGAAGACGCT 692
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 736 AGTTACGATGTTTCTTGTTTGTGTTCGTATAAGTTTTGCTGGAATTGCTGTGAAGACGCT 795
Query 693 CA-TACTCCTGTGGATTGTGAAACGGTGTCAAAGTGGTTACTAAAGAACAAGGATGAGTC 751
|| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 796 CACT-CTCCTGTGGATTGTGAAACAGTGTCAAAGTGGTTACTAAAGAACAAGGATGAGTC 854
Query 752 CGAGAACACGAATTGGATACTTGCTAAGACAAAGCCTTGTCCTAAATGCAAGCGTCCTAT 811
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GGAGAACATGAATTGGATACTTGCTAAGACAAAGCCTTGTCCTAAATGCAAGCGTCCTAT 914
Query 812 TGAGAAGAACAATGGATGTAACCATATGTCATGCTCAGCTCCGTGTAGACATTATTTTTG 871
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 915 TGAGAAGAACACTGGATGTAACCATATGTCATGCTCAGCTCCATGTAGACATTATTTTTG 974
Query 872 TTGGGCTTGCCTTCAACCATTGAGC-AGTCACCAGGCTTGCAACGCGTATAAAGAAGACA 930
|||||| |||||||||||||||||| | |||| ||||||||||||||| ||||| |||||
Sbjct 975 TTGGGCATGCCTTCAACCATTGAGCGA-TCACAAGGCTTGCAACGCGTTTAAAGCAGACA 1033
Query 931 ATGAGGTTGAAACTAAGAGAAAAAGGGCTAAAGATGCGATCGATAGATACACACATTACT 990
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1034 ATGAGGATGAAACTAAGAGAAAAAGGGCTAAAGATGCGATCGATAGATACACGCATTTTT 1093
Query 991 ATGAAAGATGGGCATTCAATCAATCGTCGAGGCT-AAAGGCTGTAAGTGATCTAGAGAAA 1049
||||||||||||||||||||||||| |||||||| |||| || | |||||| | ||||||
Sbjct 1094 ATGAAAGATGGGCATTCAATCAATCCTCGAGGCTTAAAG-CTATGAGTGATTTGGAGAAA 1152
Query 1050 TGGCAGTCAGTGCAGCTTAAGGAGCTTAGTGACAATCAGAGCTCACCAGAAAGTCAGCTT 1109
||||| || ||| |||||||| |||||||||||| ||||||| ||||||||| ||||||
Sbjct 1153 TGGCAATCGGTGGAGCTTAAGCAGCTTAGTGACATTCAGAGCACACCAGAAACTCAGCT- 1211
Query 1110 C-GTTTCACCGTAGATGCGTGGCTTCAGATCATTGAATGTAGGAGGGTCTTGAAATGGAC 1168
| |||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 1212 CAGTTTCACCGTAGATGCATGGCTTCAGATCATCGAGTGTAGGAGGGTCTTGAAATGGAC 1271
Query 1169 CTATGCATATGGATACTACCTACTTACTCAAGAGCGTGACAAGCGAGAATTTTTTGAGTA 1228
||||||||||||||||||| |||||| ||||||||| ||||||||| | | |
Sbjct 1272 CTATGCATATGGATACTACATACTTAGTCAAGAGCGCAACAAGCGAG--T------A-T- 1321
Query 1229 TTTGCAAGGGGAGGCAGAAACTGGTTTGGAGAGACTTCATCATTGTGCAGAGGAGGAGTT 1288
|| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TT-GCAAGCTGAGGCAGAAAATGGTTTGGAGAGACTTCATCATTGTGCAGAGGAGGAGTT 1380
Query 1289 GAAACAGTTTATCGGTAAAACTGTAGACCCATCAAAAAATTTCGGTGAGCTCCG-GATAA 1347
||||||||||||||| |||| || |||||||||||||||||||||||||||||| | ||
Sbjct 1381 GAAACAGTTTATCGGGAAAATTGAAGACCCATCAAAAAATTTCGGTGAGCTCCGAGCGAA 1440
Query 1348 AATTAATTGATTTGACTGTAGTAACCAGAACCTACTTCGAAAATCTGGTGAAAGCTTTGG 1407
| ||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||
Sbjct 1441 A-TTAATTGATTTGACTAAAGCAACTAAAACCTACTTCGAAAATCTGGTGAAAGCTTTGG 1499
Query 1408 ATAATGGTCTTGCTGATGTTGCATATAATGAGAAGAGCCAATCAACACAAGAACCTGAAT 1467
| || ||||||| ||| || ||||||||||||| | ||| |||| | ||||||||||||
Sbjct 1500 AGAACGGTCTTGTTGACGTGGCATATAATGAGA-G--CCAGTCAATAGAAGAACCTGAAT 1556
Query 1468 CT 1469
||
Sbjct 1557 CT 1558
Score = 407 bits (220), Expect = 2e-112
Identities = 405/487 (83%), Gaps = 42/487 (9%)
Strand=Plus/Plus
Query 64 AGGAGGAGGAGGATCTT-TACATCGATGGTGGTATA-GAATCCGATGACT---ACCATTT 118
|||| ||||||||| || |||| ||||||||||| | | ||||||||||| ||| | |
Sbjct 93 AGGA-GAGGAGGAT-TTGTACAGCGATGGTGGTA-ACGTATCCGATGACTACAACCCTGT 149
Query 119 TGAAGACACAATTAGTCGATCTGAGAAAAGTTACGTAATTCTCAAGGAAGAAGATATTCT 178
|| |||||||||||||||||||||||||||||||| || | ||||||||||| |||||
Sbjct 150 GGACGACACAATTAGTCGATCTGAGAAAAGTTACGTTGTTGTTAAGGAAGAAGACATTCT 209
Query 179 CAAGCATCAAAGAGACGATATCGAACGAGTTTCCACGGCTCTCTCTCTAAGCCACGTCGA 238
|||| |||||||||||||||||||| |||||| |||| ||||||| ||||||| || ||
Sbjct 210 TAAGCTTCAAAGAGACGATATCGAACAAGTTTCGACGGTTCTCTCTGTAAGCCAAGTGGA 269
Query 239 AGCGACCGTTCTTCTTCTTCACTTTCATTGGAGTGCTAGTAAGA-TCGAAGATGAATGGT 297
| ||| ||||| |||||||||| ||||||| ||| |||||| | |||||||||||||||
Sbjct 270 ATCGATTGTTCTGCTTCTTCACTATCATTGGTGTGTTAGTAA-ACTCGAAGATGAATGGT 328
Query 298 TTACGGACG-A-AGAG-A---G--AATCC----G-----TAAA--A--C---CGTTG--G 331
||||||||| | |||| | | || || | |||| | | ||||| |
Sbjct 329 TTACGGACGAAGAGAGAATCCGTAAAACCGTTGGTATATTAAAGGAGCCTGTCGTTGATG 388
Query 332 --AAT--TAGAGAAGTGAATATCCATTGTGGAATTTGCTTTGAATCATACACTCGAGAAG 387
||| || ||||||| |||| || |||||||||||||||||||||||||||||| |||
Sbjct 389 TTAATGGTACAGAAGTGGATATTCAATGTGGAATTTGCTTTGAATCATACACTCGA-AAG 447
Query 388 -AAATTGCAAGGGTTTCTTGTGGTCATCCTTATTGCAATACTTGTTGGACTGGTTACATC 446
||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 448 GAAATTGCTAGGGTTTCTTGTGGTCATCCTTATTGCAAGACCTGCTGGACTGGTTACATC 507
Query 447 ACTACAAAAATCGAAGACGGTCCAGGATGTTTAAGGGTTAAATGTCCTGAGCCTTCTTGT 506
||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 508 ACTACGAAAATCGAAGACGGTCCGGGATGTTTAAGGGTTAAATGTCCCGAACCTTCTTGT 567
Query 507 TCCGCTG 513
| |||||
Sbjct 568 TACGCTG 574
> AT2G31770.1 | Symbols: ARI9, ATARI9 | RING/U-box superfamily
protein | chr2:13511579-13513550 FORWARD LENGTH=1632
Length=1632
Score = 843 bits (456), Expect = 0.0
Identities = 781/936 (83%), Gaps = 30/936 (3%)
Strand=Plus/Plus
Query 515 TAAGGAGAAATA-TCATAGATATCTTCTTAGGTCTTATGTCGAAGAAGGGAAGAAGATTA 573
||| ||||| || || ||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 585 TAACGAGAAGTATTC-TAGATATATTCTTAGGTCTTATGTAGAAGATGGGAAGAAGATTA 643
Query 574 AATGGTGTCCATCACCGGGATGCGAATATGCTATTGAATTTGGTGGAAGTGGAAGTAGTA 633
|||||||||||||||||||||||| ||| || ||||||| |||||||||| ||||||||
Sbjct 644 AATGGTGTCCATCACCGGGATGCGGATACGCGGTTGAATTCGGTGGAAGTGAAAGTAGTA 703
Query 634 GTTACGATGTTTCTTGTTTGTGTTCGTATAGGTTCTGCTGGAATTGCTGTGAAGACGCTC 693
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct 704 GTTACGATGTTTCTTGTTTGTGTTCGTATAGGTTTTGCTGGAATTGCAGTGAAGATGCTC 763
Query 694 ATACTCCTGTGGATTGTGAAACGGTGTCAAAGTGGTTACTAAAGAACAAGGATGAGTCCG 753
| | ||||||||||||||| ||||| ||||| ||| || | |||||| |||||||||| |
Sbjct 764 ACAGTCCTGTGGATTGTGACACGGTTTCAAAATGGATATTCAAGAACCAGGATGAGTCGG 823
Query 754 AGAACACGAATTGGATACTTGCTAAGACAAAGCCTTGTCCTAAATGCAAGCGTCCTATTG 813
|||||| ||||||||| ||||| || |||||||||||||| |||||||||||||||| |
Sbjct 824 AGAACAAGAATTGGATGCTTGCGAATTCAAAGCCTTGTCCTGAATGCAAGCGTCCTATCG 883
Query 814 AGAAGAACAATGGATGTAACCATATGTCATGCTCAGCTCCGTGTAGACATTATTTTTGTT 873
|||||||| ||||||||||||||||| |||| |||||||||||| ||||| | |||||||
Sbjct 884 AGAAGAACGATGGATGTAACCATATGACATGTTCAGCTCCGTGTGGACATGAGTTTTGTT 943
Query 874 GGGCTTGCCTTCAACCAT-T-GAGCAGTCAC--CAG-GCTTGCAAC-GCGTATAAAGAAG 927
|| ||| ||| || ||| | | | ||||| | | |||||||| | || | | |
Sbjct 944 GGATTTGTCTTAAAGCATATCGT-C-GTCACAGCGGTGCTTGCAATAG-GTTTGTTGTGG 1000
Query 928 A-CAATGAGGTTGAAACTAAGAGAAAAAGGGCTAAAGA-TGCGATCGATAGATACACACA 985
| || | | |||| ||||||| | | || ||| || ||| | |||||||| ||
Sbjct 1001 AGCA--G-GCA-GAAAGTAAGAGAGCATTG-CTTCAGAGTGAAATCAAAAGATACACGCA 1055
Query 986 TTACTATGAAAGATGGGCATTCAATCAATCGTCGAGGCTAAAGGCTGTAAGTGATCTAGA 1045
||| |||| |||||||||| |||||||||||||||||||||||| | || ||||| ||
Sbjct 1056 TTATTATGTAAGATGGGCAGAAAATCAATCGTCGAGGCTAAAGGCTATGAGAGATCTGGA 1115
Query 1046 GAAATGGCAGTCAGTGCAGCTTAAGGAGCTTAGTGACAATCAGAGCTCACCAGAAAGTCA 1105
||| | ||| || |||||||||||||||||||||||||||||| || | | |||| |||
Sbjct 1116 GAAGTTGCAATCGGTGCAGCTTAAGGAGCTTAGTGACAATCAGTGCACGTCTGAAACTCA 1175
Query 1106 GCTTCGTTTCACCGTAGATGCGTGGCTTCAGATCATTGAATGTAGGAGGGTCTTGAAATG 1165
||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 1176 GCTTCAATTCACCGTAGATGCATGGCTTCAGATCATCGAATGTAGGAGAGTCTTGAAATG 1235
Query 1166 GACCTATGCATATGGATACTACCTACTTACTCAAGAGCGTGAC-AAGCGAGAA-TTTTTT 1223
||| |||||||||||||||||||| | | |||| | | | ||||| ||| ||||||
Sbjct 1236 GACATATGCATATGGATACTACCT--T--C--AAGATC-TCCCCAAGCG-GAAATTTTTT 1287
Query 1224 GAGTATTTGCAAGGGGAGGCAGAAACTGGTTTGGAGAGACTTCATCATTGTGCAGAGGAG 1283
|||||||||||||||||||| ||| | ||||||||||| |||||||||||||||||| |
Sbjct 1288 GAGTATTTGCAAGGGGAGGCTGAATCAGGTTTGGAGAGGCTTCATCATTGTGCAGAGAAT 1347
Query 1284 GAGTTGAAACAGTTTATCGGTAAAACTGTAGACCCATCAAAAAATTTCGGTGAGCTCCGG 1343
||||||||||| ||| || ||||| || ||| ||||| | | |||| || |||||
Sbjct 1348 GAGTTGAAACAATTTTTCATTAAAAGTGAAGATCCATCCGATACTTTCAATGCTTTCCGG 1407
Query 1344 ATAAAATTAATTGATTTGACTGTAGTAACCAGAACCTACTTCGAAAATCTGGTGAAAGCT 1403
|| ||||||| || ||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1408 ATGAAATTAACTGGTTTGACTACAGTAACCAAAACCTACTTCGAAAATCTGGTGAAAGCT 1467
Query 1404 TTGGATAATGGTCTTGCTGATGTTG-CATATAATGA 1438
||||| |||||||| | |||||| | || |||||||
Sbjct 1468 TTGGAGAATGGTCTGGTTGATGT-GACACATAATGA 1502
Score = 292 bits (158), Expect = 5e-78
Identities = 175/183 (96%), Gaps = 1/183 (1%)
Strand=Plus/Plus
Query 332 AAT-TAGAGAAGTGAATATCCATTGTGGAATTTGCTTTGAATCATACACTCGAGAAGAAA 390
||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 359 AATGTAGAAAAGTGAATATCCAATGTGGAATTTGCTTTGAATCATACACTCGAGAGGAAA 418
Query 391 TTGCAAGGGTTTCTTGTGGTCATCCTTATTGCAATACTTGTTGGACTGGTTACATCACTA 450
|||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||
Sbjct 419 TTGCAAGGGTTTCTTGTGGTCATCCTTATTGCAAGACTTGCTGGGCTGGTTACATCACTA 478
Query 451 CAAAAATCGAAGACGGTCCAGGATGTTTAAGGGTTAAATGTCCTGAGCCTTCTTGTTCCG 510
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAAAAATCGAAGACGGTCCGGGATGTTTAAGGGTTAAATGTCCTGAGCCTTCTTGTTCCG 538
Query 511 CTG 513
|||
Sbjct 539 CTG 541
> AT2G31760.1 | Symbols: ARI10, ATARI10 | RING/U-box superfamily
protein | chr2:13508493-13510390 FORWARD LENGTH=1545
Length=1545
Score = 743 bits (402), Expect = 0.0
Identities = 752/920 (82%), Gaps = 27/920 (3%)
Strand=Plus/Plus
Query 513 GATAAGGAGAAATATCATAGATATCTTCTTAGGTCTTATGTCGAAGAAGGGAAGAAGATT 572
|||||||| || ||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct 562 GATAAGGACAAGTATTATAGATATTTTCTTAGGTCTTATGTCGAAGACGGGAAGAAGATG 621
Query 573 AAATGGTGTCCATCACCGGGATGCGAATATGCTATTGAATTTGGTGGAAGTGGAAGTAGT 632
|||||||||||||||||||||||||||| || |||||||||||| |||| | || |
Sbjct 622 AAATGGTGTCCATCACCGGGATGCGAATGCGCGGTTGAATTTGGTGAAAGT--A-GT-G- 676
Query 633 AGTTACGATGTTTCTTGTTTGTGTTCGTATAGGTTCTGCTGGAATTGCTGTGAAGACGCT 692
||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 677 -GTTACGATGTTGCTTGTTTGTGTTCGTATAGGTTTTGCTGGAATTGCAGTGAAGATGCT 735
Query 693 CATACTCCTGTGGATTGTGAAACGGTGTCAAAGTGGTTACTAAAGAAC-AAGGATGAGTC 751
|| | |||||||||||||||||| |||||||| ||| || | |||||| ||| |||||||
Sbjct 736 CACAGTCCTGTGGATTGTGAAACAGTGTCAAAATGGATATTCAAGAACCAAG-ATGAGTC 794
Query 752 CGAGAACACGAATTGGATACTTGCTAAGACAAAGCCTTGTCCTAAATGCAAGCGTCCTAT 811
||||||| |||||||||||| || || | ||||| |||||||||||||| ||||||||
Sbjct 795 GGAGAACAAGAATTGGATACTAGCGAATTCGAAGCCATGTCCTAAATGCAAACGTCCTAT 854
Query 812 TGAGAAGAACAATGGATGTAACCATATGTCATGCTCAGC-TCCGTGTAGACATTATTTTT 870
||||||| | ||||||||||||||||| |||||||||| || |||| | ||| |||||
Sbjct 855 CGAGAAGAGCCATGGATGTAACCATATGACATGCTCAGCGTC-GTGTGGCCATCGTTTTT 913
Query 871 GTTGGGCTTGCCTTCAACCAT-T-GAGCAGTCACCAGGCTTGCAACGCGTATAAAGAAGA 928
||||| ||| | || ||| | | | | |||| | ||||||||| ||| |||||
Sbjct 914 GTTGGATTTGTGGTAAATCATATAGTG-A-TCACTATGCTTGCAACAATTATGTTGAAGA 971
Query 929 CAATGAGGTTGAAACTAAGAGAAAAAGGGCTAAAGA-TGCGATCGATAGATACACACATT 987
||| || |||||||| | | || ||| || ||| | |||||||| ||||
Sbjct 972 TGCTGATCACGA---TAAGAGAACATTG-CTTCAGAGTGAAATCAAAAGATACACGCATT 1027
Query 988 ACTATGAAAGATGGGCATTCAATCAATCGTCGAGGCTAAAGGCTGTAAGTGATCTAGAGA 1047
| |||| |||||||| | ||||||||||||||||| |||||| | |||||||| ||||
Sbjct 1028 ATTATGTAAGATGGGTAGAAAATCAATCGTCGAGGCTTAAGGCTATGAGTGATCTGGAGA 1087
Query 1048 AATGGCAGTCAGTGCAGCTTAAGGAGCTTAGTGACAATCAGAGCTCACCAGAAAGTCAGC 1107
||| || || |||||||| ||| ||||||||||||||||| || |||| ||| | | |
Sbjct 1088 AATTCCAATCGGTGCAGCTAAAGCAGCTTAGTGACAATCAGTGCAAACCAAAAATTGATC 1147
Query 1108 TTCGTTTCACCGTAGATGCGTGGCTTCAGATCATTGAATGTAGGAGGGTCTTGAAATGGA 1167
| | |||| |||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 1148 TCCAATTCATTGTAGATGCATGGCTTCAGATCATCGAATGTAGGAGAGTCTTGAAATGGA 1207
Query 1168 CCTATGCATATGGATACTACCTACTTACTCAAGAGCGTGACAAGCGAGAATTTTTTGAGT 1227
| |||||||||||||||||||| | | | || || ||||||| ||| |||||||
Sbjct 1208 CATATGCATATGGATACTACCT--TGA-T-AATCTCGC--CAAGCGACCATTGTTTGAGT 1261
Query 1228 ATTTGCAAGGGGAGGCAGAAACTGGTTTGGAGAGACTTCATCATTGTGCAGAGGAGGAGT 1287
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | ||||
Sbjct 1262 ATTTGCAAGGGGAGGCTGAAACAGGTTTGGAGAGGCTTCATCATTGTGCAGAGAATGAGT 1321
Query 1288 TGAAACAGTTTATCGGTAAAACTGTAGACCCATCAAAAAATTTCGGTG-AGCTCCGGATA 1346
||||||| ||| || ||||| || ||| ||||| | | |||| || | |||||||
Sbjct 1322 TGAAACAATTTTTCATTAAAAGTGAAGATCCATCCGATACTTTCAATGCAT-TCCGGATG 1380
Query 1347 AAATTAATTGATTTGACTGTAGTAACCAGAACCTACTTCGAAAATCTGGTGAAAGCTTTG 1406
||||||| || ||||||| |||||| | |||||| ||||| ||||||||||||||||||
Sbjct 1381 AAATTAACTGGTTTGACTAAAGTAACTAAAACCTATTTCGATAATCTGGTGAAAGCTTTG 1440
Query 1407 GATAATGGTCTTGCTGATGT 1426
|| |||||||||||||||||
Sbjct 1441 GAGAATGGTCTTGCTGATGT 1460
Score = 392 bits (212), Expect = 5e-108
Identities = 433/531 (82%), Gaps = 49/531 (9%)
Strand=Plus/Plus
Query 21 ATGGATTATTCAGATGATGACATAATCGATATCTCATCAGGAGAGGAGGAGGAGGATCTT 80
||||||||||||||||||||||| ||||||| | |||| | | |||||| || | |
Sbjct 1 ATGGATTATTCAGATGATGACATGATCGATAACGAATCA-G-G-GGAGGA-GA--A---T 51
Query 81 TACATCGATGGTGGT-AT-A-GAATCCGATGACTAC--C-ATTTTGAAGACACAATTAGT 134
||| |||||||||| | | |||||| | ||||| | | | ||||||||||| |
Sbjct 52 AACAGCGATGGTGGTGGTAATGAATCCTACAACTACAACGCTGCGGTAGACACAATTATT 111
Query 135 CGATCTGAGAAAAGTTACGTAATTCTCAAGGAAGAAGATATTCTCAAGCATCAAAGAGAC 194
| |||||||||||||||||| ||| ||||||||||||| ||||| |||| ||||||||||
Sbjct 112 CTATCTGAGAAAAGTTACGTGATTATCAAGGAAGAAGAGATTCTGAAGCTTCAAAGAGAC 171
Query 195 GATATCGAACGAGTTTCCACGGCTCTCTCTCTAAGCCACGTCGAAGCGACCGTTCTTCTT 254
|| |||||||||||||||||| ||||| ||||||||| || ||||||| ||||| |||
Sbjct 172 GACATCGAACGAGTTTCCACGATTCTCTTTCTAAGCCAAGTGGAAGCGATTGTTCTGCTT 231
Query 255 CTTCACTTTCATTGGAGTGCTAGTAAGA-TCGAAGATGAATGGTTTACGGACG-A-AGAG 311
||||||| ||||||| ||| |||||| | |||||||||||||||||||||||| | ||||
Sbjct 232 CTTCACTATCATTGGTGTGTTAGTAA-ACTCGAAGATGAATGGTTTACGGACGAAGAGAG 290
Query 312 -A---G--AATCC----G-----TAAA--A--C---CGTTG--G--AAT--TAGAGAAGT 343
| | || || | |||| | | ||||| | ||| || ||||||
Sbjct 291 AATCCGTAAAACCGTTGGTATATTAAAGGAGCCTGTCGTTGATGTTAATGGTACAGAAGT 350
Query 344 GAATATCCATTGTGGAATTTGCTTTGAATCATACACTCGAGAAG-AAATTGCAAGGGTTT 402
| |||| || |||||||||||||||||||||||||||||| ||| ||||||| || ||||
Sbjct 351 GGATATTCAATGTGGAATTTGCTTTGAATCATACACTCGA-AAGGAAATTGCTAGTGTTT 409
Query 403 CTTGTGGTCATCCTTATTGCAATACTTGTTGGACTGGTTACATCACTACAAAAATCGAAG 462
|||||||||||||||||||||| || || |||||||||||||||||||| ||||||||||
Sbjct 410 CTTGTGGTCATCCTTATTGCAAGACCTGCTGGACTGGTTACATCACTACGAAAATCGAAG 469
Query 463 ACGGTCCAGGATGTTTAAGGGTTAAATGTCCTGAGCCTTCTTGTTCCGCTG 513
||||||| ||||||||||||||||||||||| || |||||||||| |||||
Sbjct 470 ACGGTCCGGGATGTTTAAGGGTTAAATGTCCCGAACCTTCTTGTTACGCTG 520
> AT1G63760.1 | Symbols: ARI6, ATARI6 | pseudogene, ARI protein,
similar to ARI protein (A Drosophila RING Finger Motif Involved
in Axonal Path-finding in the Central Nervous System)
GB:CAA66953 (Drosophila melanogaster); blastp match of 86% identity
and 5.3e-235 P-value to GP|6850317|gb|AAF29394.1|AC009999_14|AC009999
Contains similarity to Ariadne-2 protein from
Drosophila melanogaster gb|AJ010169 and contains an IBR
PF|01485 and a zf-C3HC4 (RING finger) PF|00097 domain. ESTs
gb|AA585849, gb|T42014 come from this gene. -TRUNCATED- | chr1:23655713-23657612
FORWARD LENGTH=1900
Length=1900
Score = 178 bits (96), Expect = 2e-43
Identities = 351/467 (75%), Gaps = 46/467 (10%)
Strand=Plus/Plus
Query 977 ATACACACATTACTATGAAA-GATGGGCATTCAATCAA-TCGTCGAGGCTAAAGGCTGTA 1034
|||||| ||||||||| ||| |||||||| ||||||| | |||||||| ||| ||| |
Sbjct 1101 ATACACTCATTACTAT-AAACGATGGGCAAGCAATCAAGT-GTCGAGGCAAAAAGCTATG 1158
Query 1035 AGTGATCTAG-AG-AAATGGCAGTCAGTGCAGCTTAAGG-AGCTTAGTGACAAT-CAGAG 1090
| ||||| | || |||| ||| |||| | ||||| ||| ||||||||||| || ||| |
Sbjct 1159 GGGGATCT-GCAGAAAAT-GCAATCAGAGAAGCTT-AGGAAGCTTAGTGAC-ATACAGTG 1214
Query 1091 CTCACCAGAAAGTCAGCTTC--GTTTCACCGTAGATGCGTGGCTTCAGATCATTGAATGT 1148
| || ||||| ||||| || |||| | || ||| || ||||| ||||||||||||||
Sbjct 1215 CACATCAGAATCTCAGC-TCAAGTTT-ATCGCAGAGGCTTGGCTCCAGATCATTGAATGC 1272
Query 1149 AGGA-GGGT-CTTGAAATGGACCTATGCATATGGATACTACCTACTTACTCA-A-GAGCG 1204
| || |||| | | |||||||| ||||||||||||||||| | ||| || | || |
Sbjct 1273 A-GACGGGTAC-TCAAATGGACATATGCATATGGATACTA--T--GTAC-CAGATGATCA 1325
Query 1205 TGAC-AAGCGAGAATTTTTTGAGTATTTGCAAGGGGAGGCAGAAACTGGTTTGGAGAGAC 1263
| || ||| | |||||||||||||||||||||||||||| || | ||||||||||| |
Sbjct 1326 T-ACTAAGAAACAATTTTTTGAGTATTTGCAAGGGGAGGCTGAGTCAGGTTTGGAGAGGC 1384
Query 1264 TTCATC-ATTGTGCAGAGGAGGAG-TTGAAACAGTTT-A-TC-GGTAAAACTGTAGACCC 1318
| || | | || |||| | || |||| |||| | | ||| | | | |||
Sbjct 1385 TCCA-CGAATGCATAGAGAATGATATTGAGGT-GTTTGAATTTGGTGAG---G--G-CCC 1436
Query 1319 ATCAAAA-AATTTCGGTGAGCTCCGGATAAAATTAATTGATTTGACT-GTAGTAACCAGA 1376
||| | |||| | | | |||||| |||||||| |||||| || | | |||| | |
Sbjct 1437 TTCAGAGGAATT-CAATCATTTCCGGACAAAATTAACTGATTTAACCAGCA-TAACAAAA 1494
Query 1377 ACCTACTTCGAAAATCTGGTGAAAGCTTTGGATAATGGTCTTGCTGA 1423
|||| |||| |||||||||| |||||| |||| ||||||||||||||
Sbjct 1495 ACCTTCTTCCAAAATCTGGTCAAAGCTCTGGAGAATGGTCTTGCTGA 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76756633305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5