BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933727
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31790.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2283 0.0
> AT2G31790.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr2:13518211-13520364 FORWARD LENGTH=1629
Length=1629
Score = 2283 bits (1236), Expect = 0.0
Identities = 1350/1406 (96%), Gaps = 4/1406 (0%)
Strand=Plus/Plus
Query 12 CCAAAAAGAATGAGTGAAGC--A-AAGGGTCACGTACTGTTTTTTCCATATCCATTACAA 68
||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 51 CCAAAAA-AATGAGTGAAGCAAAGAAGGGTCACGTACTGTTTTTTCCATATCCATTACAA 109
Query 69 GGCCACATTAACCCAATGATCCAACTCGCTAAACGCTTATCCAAAAAGGGCCTCGCTATC 128
||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 110 GGCCACATTAACCCAATGATCCAACTCGCTAAACGCTTATCCAAAAAGGGCATCACCAGC 169
Query 129 ACACTCATCATCGCCTCAAAAGACCACCGTGAACCTTACACCTCCGAAGACTATTCCATC 188
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 170 ACACTCATCATCGCCTCCAAAGACCACCGTGAACCTTACACCTCCGACGACTACTCCATC 229
Query 189 ACCATCCACACCATCCACGACGGTTTCTTTCCAGATGAACACCCTCACGCCAAGTTCGTA 248
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 230 ACCGTCCACACCATCCACGACGGTTTCTTTCCACATGAACACCCTCACGCCAAGTTCGTA 289
Query 249 GATCTTGACCGTTTCAACAACTCTACTTCTCGTAGCCTCACCGATTTCATCTCTAGTGCG 308
||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 290 GATCTTGACCGTTTCCACAACTCTACTTCTCGAAGCCTGACCGATTTCATCTCTAGTGCG 349
Query 309 AAGTTGTCGGGCAATCCTCCAAAAGCTCTGATCTATGATCCATTTATGCCCTTTGCATTG 368
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 AAGTTGTCGGACAATCCTCCAAAAGCTCTGATCTATGATCCATTTATGCCCTTTGCATTG 409
Query 369 GACATAGCCAAGGACTTGGATCTATACGTAGTGGCATATTTCACTCAACCATGGTTGGCT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 GACATAGCCAAGGACTTGGATCTATACGTAGTGGCATATTTCACTCAACCATGGTTGGCT 469
Query 429 AGCCTTGTTTACTACCATATCAACGAAGGCGCCTACGATGTTCCCGTTGATAGACACGAG 488
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 470 AGTCTTGTTTACTACCATATCAACGAAGGCACCTACGATGTTCCCGTTGATAGACACGAG 529
Query 489 AACCCAACACTTGCATCTTTTCCAGGTTTCCCATTGTTAAGCCAAGATGATCTGCCTTCG 548
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 530 AACCCAACACTTGCATCGTTTCCTGGTTTCCCATTGTTAAGCCAAGATGATCTGCCTTCG 589
Query 549 TTCGCCTGCGAAAAAGGGTCATACCCTCTTATACACGAGTTTGTGGTTAGGCAATTCTCT 608
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 590 TTCGCCTGCGAAAAAGGGTCGTACCCTCTTCTACACGAGTTTGTGGTTAGGCAATTCTCT 649
Query 609 AATTTGTTGCAAGCTGATTGCATTCTCTGCAACACTTTTGATCAACTTGAACCAAAGGTA 668
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AATTTATTGCAAGCTGATTGCATTCTCTGCAACACTTTTGATCAACTTGAACCAAAGGTA 709
Query 669 GTGAAATGGATGAATGATCAGTGGCCGGTGAAGAACATTGGACCGGTAGTTCCGTCGAAG 728
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 710 GTGAAATGGATGAATGATCAATGGCCGGTGAAGAACATTGGACCGGTGGTTCCATCGAAG 769
Query 729 TTCCTGGATAATCGGTTGCCAGAAGACAAAGATTACGAACTTGAGAACTCCAAGACAGAG 788
||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 770 TTCTTGGATAACCGGTTGCCAGAAGACAAAGATTACGAACTCGAGAACTCCAAGACAGAG 829
Query 789 CCAGACGAGTCTGTTTTGAAGTGGTTGGGGAATAGGCCAGCGAAGTCGGTGGTTTACGTG 848
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 830 CCAGACGAGTCTGTTTTGAAGTGGTTGGGAAACAGGCCGGCGAAGTCGGTGGTTTACGTG 889
Query 849 GCGTTCGGGACATTGGTGTCTTTGAGCGAAAAACAGATGAAAGAAACCGCAATGGCGATT 908
||||| |||||||||||| |||||||||||||||||||||| |||| ||||||||||||
Sbjct 890 GCGTTTGGGACATTGGTGGCTTTGAGCGAAAAACAGATGAAGGAAATTGCAATGGCGATT 949
Query 909 AGACAAACCGGATATCACTTCTTGTGGTCCGTTAGAGAATCCGAGAGAAGCAAACTACCG 968
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 950 AGCCAAACCGGATATCACTTCTTGTGGTCTGTTAGAGAATCCGAGAGAAGCAAACTACCC 1009
Query 969 TCTGGTTTTATCGAAGATGCAGAGGAGAAAGACTATGGACTTGTGGCTAAGTGGGTTCCT 1028
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1010 TCTGGTTTTATCGAAGAGGCAGAGGAGAAAGACTCTGGACTTGTGGCTAAGTGGGTTCCT 1069
Query 1029 CAGCTAGAGGTTTTGGCACATGAATCAATCGGGTGTTTCGTGTCACACTGTGGATGGAAC 1088
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 CAGCTAGAGGTTTTAGCACATGAATCAATCGGGTGTTTCGTGTCACACTGTGGATGGAAC 1129
Query 1089 TCGACATTGGAGGCACTGTGCTTAGGGGTTCCAATGGTGGGAATGCCTCAGTGGACGGAT 1148
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1130 TCGACATTGGAGGCACTATGCTTAGGGGTTCCAATGGTGGGCGTGCCTCAGTGGACTGAT 1189
Query 1149 CAGCCCACAAATGCTAAGTTCATAGAGGATGTGTGGAAGATTGGGGTTAGAGTGAGGACC 1208
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CAGCCCACAAATGCTAAGTTTATAGAGGATGTGTGGAAGATTGGGGTTAGAGTGAGGACC 1249
Query 1209 GATGGAGAAGGGCTTGCGAGTAAGGAAGAGATTGCGAGATGCGTTGTTGAGGTCATGGAA 1268
||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1250 GATGGAGAAGGGCTTTCGAGTAAAGAAGAGATTGCGAGATGCATTGTTGAGGTCATGGAA 1309
Query 1269 GGAGAGAGAGGGAAAGAGATGAGGAAGAATGTTGAGAAGCTTAAGGTGTTGGCTCGTGAA 1328
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1310 GGAGAGAGAGGGAAAGAGATAAGGAAGAATGTTGAGAAGCTTAAGGTGTTGGCTCGCGAA 1369
Query 1329 GCTATCTCTGAAGGAGGTAGTTCCGACAAGAACATTGATGAGTTTGTTGCTCTTTTGACT 1388
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1370 GCTATCTCTGAAGGAGGTAGTTCCGACAAGAAGATTGATGAGTTTGTTGCTCTTTTGACT 1429
Query 1389 TAACAATTTGAATCTGAGATGTCATC 1414
|||||||||||| |||||||||||||
Sbjct 1430 TAACAATTTGAAACTGAGATGTCATC 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69678356460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5