BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933732
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31840.1 | Symbols: | Thioredoxin superfamily protein | chr... 1639 0.0
> AT2G31840.1 | Symbols: | Thioredoxin superfamily protein | chr2:13537912-13539758
REVERSE LENGTH=1184
Length=1184
Score = 1639 bits (887), Expect = 0.0
Identities = 1019/1083 (94%), Gaps = 8/1083 (1%)
Strand=Plus/Plus
Query 15 GGAGGAATGATTCTTCCATATTCGACACAGTTCACTTGCCCTGTTCAAGAAAATGGATTC 74
||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||
Sbjct 35 GGAGGAATGATTCTTCCATTTTCGACACAGTTCACTTGCCCTGTTCAGGATAATGGATTC 94
Query 75 AGCTCTTCTTCAGTACTTTCCCATTGCAAAAGAGATCGTTTTGAGGTTACTTCGTTGAGG 134
||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 95 AGCCCTTCTTCACTACTTTCCCATTGCAAAAGAGATCGTTTTGAAGTTACTTCGTTGAGA 154
Query 135 TATGACTGTTTTGCTTCGGTGAAGATTCCCTCCTCCTCGAAGTGGAATGTTATGAGGTCA 194
||||||| ||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 155 TATGACTCTTTTGGTTCGGTGAAGACTGCCTCCTCCTCGAAGTGGAATGTTATGAGGTCG 214
Query 195 AGAAGAAATGTGAAAGCTTTTGGGTTGGTTGATAAACTTGGGAAGAAGGTATGGAG-AGG 253
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 215 AGGAGAAATGTGAAAGCTTTTGGGTTAGTTGATAAACTTGGGAAGAAGGTATGGAGAAAG 274
Query 254 CAAAGAACAAGATAGTGACAGTGAAGACGAGGAAGATGAAGTGAAAAAAGATAACTCTGG 313
|||||| ||||||||||||||||||| |||||||||||||||||| |||| | || |||
Sbjct 275 -AAAGAAGAAGATAGTGACAGTGAAGATGAGGAAGATGAAGTGAAAGAAGAGACCTTTGG 333
Query 314 CGGGAAAGAAGCGAGTCTCGATGATCCGGAAGAAAGACGGGAATGGAGGAAGACGATAAG 373
||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 334 CGGGAAAGAAGCGAGTCTCGATGATCCAGTAGAGAGACGGGAATGGAGGAAGACGATAAG 393
Query 374 AGAGGTGATTGATAAGCATCCTGATATGGAAGAAGAGGAGGAGATTGATATGGTTGAGAA 433
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 394 AGAGGTGATTGATAAGCATCCTGATATTGAAGAAGACGAAGAGATTGATATGGTTGAGAA 453
Query 434 GAGGAGGAAGATGCAGAAGCTTCTTGCTGATTACCCACTTGTTGTGAATGAAGAGGATCC 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GAGGAGGAAGATGCAGAAGCTTCTTGCTGATTACCCACTTGTTGTGAATGAAGAGGATCC 513
Query 494 TAATTGGCCTGAAGATGCTGATGGTTGGGGTTTTAGTTTCAATCAGTTTTTtaataagat 553
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 514 TAATTGGCCTGAAGATGCTGATGGTTGGGGGTTTAGTTTCAATCAGTTTTTTAATAAGAT 573
Query 554 aacgattaagaatgaaaagaaggatga------tgatgatgaagataatgaaggagatga 607
|||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 574 AACGATTAAGAATGAAAAGAAGGAAGAAGAGGATGATGATGAAGATAGTGAAGGAGATGA 633
Query 608 tagtgagaaggagatTGTTTGGCAGGATGATAACTACATACGCCCGATCAAAGATCTCAC 667
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 634 TAGTGAGAAGGAGATTGTTTGGCAAGATGATAACTATATACGCCCGATTAAAGATCTCAC 693
Query 668 AACTGCAGAATGGGAGGAGACGGTGTTTAAATATATCAGTCCTCTCATGGTTCTTGTTCA 727
||| ||||||||||| ||| ||||||| ||| |||| |||||||||||||| ||||||||
Sbjct 694 AACGGCAGAATGGGAAGAGGCGGTGTTCAAAGATATTAGTCCTCTCATGGTCCTTGTTCA 753
Query 728 CAACCGCTACAAGAGGCCAAAGGAAAACGAAAAATTCAGGGAAGAACTAGAGAAGGCGAT 787
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 754 CAACCGCTACAAGAGGCCTAAGGAAAACGAAAAGTTCAGGGAAGAACTAGAGAAGGCGAT 813
Query 788 TCAAGTTATATGGAACTGTGGACTTCCATCACCTAGATGTGTTGCTGTTGATGCTGTGGT 847
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 814 TCAAGTTATATGGAACTGTGGACTTCCTTCACCAAGATGTGTTGCTGTTGATGCTGTGGT 873
Query 848 TGAGACAGATTTGGTCTCTGCTCTGAAAGTATCTGTGTTCCCGGAGATCATCTTCACGAA 907
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 874 TGAGACAGATTTGGTCTCTGCTCTGAAAGTATCTGTCTTCCCAGAGATCATCTTCACTAA 933
Query 908 AGCTGGAAAGATACTATACCGTGAGAAAGGCATTAGAACAGCAGATGAGCTTTCAAAAAT 967
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 934 AGCCGGGAAGATACTATACCGCGAGAAAGGCATTAGAACAGCAGATGAGCTTTCAAAAAT 993
Query 968 CATGGCCTTCTTCTATTACGGAGCTGCAAAACCACCTTGTTTGAATGGTGTTGTGAATTC 1027
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 994 CATGGCTTTCTTCTATTATGGAGCTGCAAAACCACCTTGTTTGAATGGTGTCGTGAATTC 1053
Query 1028 GCAAGAACATATTCCTTTAGTCGATGTAAGTGTCAATTAAGCATAGGCCTTTGTGATCTT 1087
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1054 GCAAGAACAGATTCCTTTAGTCGATGTAAGTGTGAATTAAGCATAAGCCTTTGTGATCTT 1113
Query 1088 ATG 1090
|||
Sbjct 1114 ATG 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5