BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933733

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31850.1 | Symbols:  | unknown protein; Has 18 Blast hits to...   244    3e-64


> AT2G31850.1 | Symbols:  | unknown protein; Has 18 Blast hits 
to 18 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa 
- 7; Fungi - 4; Plants - 3; Viruses - 0; Other Eukaryotes 
- 2 (source: NCBI BLink). | chr2:13540199-13540540 FORWARD 
LENGTH=342
Length=342

 Score =  244 bits (132),  Expect = 3e-64
 Identities = 245/296 (83%), Gaps = 22/296 (7%)
 Strand=Plus/Plus

Query  45   GAGAGATCCCGGAGAATATTTGATGACGTTCCAAGGAGAAAGAGAAGCAGGAGGAACCCC  104
            ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | 
Sbjct  10   GAGAGATGCCGGAGAATATTTGATGATGTTCCAAGGAGAAAGAGAAGCAGGAGGAACTCA  69

Query  105  GTCACAGAGAGGACGAAGCCC--GAATGTCAGGCTCCA-C-----CTT---C-G-T-CTC  150
            ||||||||||||| | | |||  || ||||| ||| || |     |||   | | | || 
Sbjct  70   GTCACAGAGAGGAAG-A-CCCTGGATTGTCAAGCTTCAGCTTTGTCTTCCGCTGTTCCTA  127

Query  151  CTGCTGCTCCAGC--C--CT--AGCTTTTGTTGCAATTAGACGCACTCGTCTCCGTCAGG  204
            || |||||||| |  |  ||  |||||||||||||| ||||| || | ||||||||||||
Sbjct  128  CTCCTGCTCCAACTTCAGCTCCAGCTTTTGTTGCAACTAGACTCAATGGTCTCCGTCAGG  187

Query  205  ACGACGTTGGAATGTCTGTCTCTAGCACCGGCTCCTGCTCCAGCCCCGGTTCCAGCACCG  264
            |||||| |||| ||||||  |||||||| |||||||||||||||||||  ||||||||||
Sbjct  188  ACGACGCTGGATTGTCTGGATCTAGCACTGGCTCCTGCTCCAGCCCCGACTCCAGCACCG  247

Query  265  GATCCAACTCGGTTCCAGCTTCATTTCCGGCTCTGGCTCCGGCTGGCTCCCGTTGT  320
            |||||||||||||||||||| || ||||| | | |||||||||||| ||| |||||
Sbjct  248  GATCCAACTCGGTTCCAGCTCCAGTTCCGTCACCGGCTCCGGCTGGATCCTGTTGT  303



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16186215178


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5