BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933734

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31860.1 | Symbols:  | pseudogene, poly (ADP-ribose) glycohy...   361    2e-99


> AT2G31860.1 | Symbols:  | pseudogene, poly (ADP-ribose) glycohydrolase, 
putative, contains Pfam domain, PF05028: poly (ADP-ribose) 
glycohydrolase (PARG); blastp match of 59% identity 
and 1.4e-19 P-value to EGAD|134505|143482 114E2.c protein 
{Drosophila melanogaster} | chr2:13542483-13545266 REVERSE LENGTH=2784
Length=2784

 Score =  361 bits (195),  Expect = 2e-99
 Identities = 234/253 (92%), Gaps = 1/253 (0%)
 Strand=Plus/Plus

Query  1     CAAACAATCTACCAAAAGATAATGACAATCAAATACAAATTTGGTGCTGGAGCTGAAGTT  60
             |||||||||||||||||||| ||||| |||||||| |||| ||| |||||||||||||||
Sbjct  2428  CAAACAATCTACCAAAAGATTATGACGATCAAATAGAAATCTGGAGCTGGAGCTGAAGTT  2487

Query  61    GGTGCAGAAGTAGGAGATGGAGGTGGAACCAGATATCCCGGCATGGAGACAAATGGGCTC  120
             ||  ||||||||||||| |||||||||||||||||||| ||||||||||||||||||  |
Sbjct  2488  GGACCAGAAGTAGGAGACGGAGGTGGAACCAGATATCCTGGCATGGAGACAAATGGGGAC  2547

Query  121   CTCATGCTTCTCCTTCCCCTTGGAATGTCAACAAATATCCTCTGATCACTCTCTGCGTCC  180
             || ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  2548  CTTATGCTTCTCCTTCCCCTTGGAATGTCAACAAATATCCTCCGATCACTCTCTTCGTCC  2607

Query  181   ATCTTCGCGTACACTCGGGGAAATTTGTATTGCTTTCTCCGCAAGAACGGATAACGATGA  240
             ||||||||||||||||||||| |||||| |||||||||||||||||| |||| |||||||
Sbjct  2608  ATCTTCGCGTACACTCGGGGATATTTGT-TTGCTTTCTCCGCAAGAATGGATGACGATGA  2666

Query  241   GCCGATTGGTAGA  253
             ||| |||||||||
Sbjct  2667  GCCAATTGGTAGA  2679



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11561582270


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5