BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933736
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31720.1 | Symbols: | Domain of unknown function (DUF313) ... 438 5e-122
AT2G31862.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 409 4e-113
AT2G18810.1 | Symbols: | Domain of unknown function (DUF313) ... 254 2e-66
> AT2G31720.1 | Symbols: | Domain of unknown function (DUF313)
| chr2:13485034-13485975 REVERSE LENGTH=942
Length=942
Score = 438 bits (237), Expect = 5e-122
Identities = 491/606 (81%), Gaps = 47/606 (8%)
Strand=Plus/Plus
Query 23 ATGGTGAGA-CATGATGATCTACTCAA-GCGTGTTg-agagagagaagagaAG-GTTAGA 78
||||||||| | ||||||| ||| || | || ||| || ||| |||||| || ||||||
Sbjct 1 ATGGTGAGAGGA-GATGATCAACTTAATG-GT-TTGCAGGGAGGGAAGAG-AGCGTTAGA 56
Query 79 AATGTCATATGCAGTGGCGGAGGA-AATGGTTTCTC-CTTTTATAAATGAGGAAATAGGA 136
|| | || || || | |||| || || || || | ||||| | ||||||||||||||
Sbjct 57 TATTTTATGTGTAGCGACGGA-GAGAACGG-TTAGCGCTTTTGCATATGAGGAAATAGGA 114
Query 137 GAAACGTCCACTGAAGATGATGCTAGTGCCGAGGATAAAAagagagagagaac-aagaag 195
||||| |||||||||| |||| | | |||| | | | |||| || || |||||
Sbjct 115 GAAACATCCACTGAAGGTGAT--AAAAG--GAGG-GAGAGACTGAGA-AG-ACTGAGAAG 167
Query 196 a-gagaTTAATTACGGTCTAAGGAGCACAACGATG-A-TCACGAGATCGAGCAAACGACT 252
| | ||||||||| |||| ||||||||| ||| | || | || | ||||||||||||
Sbjct 168 ATTA-ATTAATTACAGTCT---GAGCACAACTATGAATTC-C-AGCTTGAGCAAACGACT 221
Query 253 GAAGATTGATGAGTGCGAGAATCAAGA-CCAAAAGCAAAACCCTAATCTTCAAGCTTCTT 311
|||||||||||||||| |||||||||| || || ||||||||||||| | |||||||
Sbjct 222 GAAGATTGATGAGTGCAAGAATCAAGACCCGGAA-CAAAACCCTAATCGTGTTGCTTCTT 280
Query 312 CTCCAAGTTTGTGCCATGTAGCGTCCAAGAGGCCTCAAAAAGTGGTTTCAAACAAATCGA 371
||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 281 CTCCAAGTTCGTGCCATCTAGAGTCCAAGAGGCCTCAAAAAGTGGTTTCAAACAAACCGG 340
Query 372 TAAGAAGA-AGAAAGCCGGTTAGAGTTATAGTGACGGATGAAGATAGGACGCCGCCGGAA 430
|||||| | ||||||||||||| | | ||||| |||||||||||||| ||| |||||
Sbjct 341 TAAGAA-ACAGAAAGCCGGTTA---T-A--GTGACAGATGAAGATAGGACACCGACGGAA 393
Query 431 TGGCTGGTTAACATGATGAGAGAAAAGAACAGTGTGGATGCAAAGCTGATATTTGTCAAG 490
|||||| || || ||||||||||| |||| || |||||||||||||||||||||| |||
Sbjct 394 TGGCTGATTGACGTGATGAGAGAAGTGAACGGTATGGATGCAAAGCTGATATTTGTGAAG 453
Query 491 GTTCTTACCAATAGTGATGTTGACGA--TGACAAGACACGTCTCT-TGATGCCCTGGAAA 547
|||||| ||||||||||||| ||||| | || ||||||||| | |||||||||||||
Sbjct 454 GTTCTTCCCAATAGTGATGTCGACGAACTT-CA-GACACGTCT-TATGATGCCCTGGAAG 510
Query 548 CAGATACTGGATATGGGCTTCTTAAACAAGGAAGAGTTAAGAATGA-TAGATaaacatta 606
|||||||| ||||||| |||||||||| ||||||||||| ||| | |||||| |||| |
Sbjct 511 CAGATACTAGATATGGACTTCTTAAACGAGGAAGAGTTA-GAAAAAATAGATAGACATCA 569
Query 607 caaaaa 612
||||||
Sbjct 570 CAAAAA 575
Score = 130 bits (70), Expect = 3e-29
Identities = 103/118 (87%), Gaps = 5/118 (4%)
Strand=Plus/Plus
Query 1045 CCTAAATTTATTTGTTGAAGTGCCCGAGGAGAC-AATTCGTCTCGAGGCTCTACAAGAGG 1103
|||||||||||| | | || || ||||||||| | || ||||||||||| |||||||||
Sbjct 825 CCTAAATTTATTGGCTAAATTGTGCGAGGAGACGACTT-GTCTCGAGGCTTTACAAGAGG 883
Query 1104 CAAATAGGA-G-G-TCACTGGTCTCCGACACAGAGCTGGACCTCGAGCTCCGGTTGTA 1158
||||||||| | | ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 884 CAAATAGGATGAGCTCACTCGTCTCGGACACAGAGCTGGACCTCGAGCTCCGGTTGTA 941
> AT2G31862.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF313) (TAIR:AT2G31720.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:13545549-13546464
FORWARD LENGTH=916
Length=916
Score = 409 bits (221), Expect = 4e-113
Identities = 394/471 (84%), Gaps = 38/471 (8%)
Strand=Plus/Plus
Query 708 AGCTAAACCTCAGGAGATGGGATATGTGGTCCACTTTCAACTACGTCTTGGCTTCAGGAT 767
|||| || |||||||||||| ||||| ||||||||| || ||||||||||||||| |||
Sbjct 271 AGCTTAATCTCAGGAGATGGAATATGAGGTCCACTTCCATTTACGTCTTGGCTTCAAGAT 330
Query 768 GGAACAAGGTCGTCCCCGGTAACACTCTAGA-GGAAGGCCTGAGGCTTCGGCTCTGGTCC 826
|||| ||||||||| ||| |||||||||| | ||||||| |||| ||||||||||||||
Sbjct 331 GGAAAAAGGTCGTCTCCGATAACACTCTA-ATTGAAGGCCAGAGGATTCGGCTCTGGTCC 389
Query 827 TTCCACTCCCAAGACAAGCTCTATATTGCTCTAGTTCCTCTGGATCCAGCTCCAGCTAAA 886
|||||||||| || |||||| ||||||||||| |||||||||||||||||||||||
Sbjct 390 TTCCACTCCCTAGCCAAGCTATATATTGCTCTTGTTCCTCTGGATCCAGCTCCAGC---- 445
Query 887 GATCCAACACCAGCTCCGGCTATCCCTCTGATTCCAGATCCAGCTCCATCTTCACCTCCG 946
| | || | ||| |||||||| |||| ||||| |||| ||||||| | | ||
Sbjct 446 --T-C--CA--A-CTCTGGCTATCCTTCTGGCTCCAGCTCCAACTCCATC-T----T-CG 491
Query 947 GCTCCGGTTGTTACTAGAGATTCTGACGAGCTATATATATCTCAAGCTGAGGCTCAAGAA 1006
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 492 CCTCCGGTTGTTACTAGAGATTCTGACGAGCTATATATATCTCATGCTGATGCTCAAGAA 551
Query 1007 GAGAGTGACAG-A-A--T--AGTTC---CAGATAAAGATTTGGAGGT-CCTAAATTTATT 1056
||| ||||||| | | | ||||| ||||||| |||| ||| || ||||||||||||
Sbjct 552 GAGGGTGACAGAATACTTCCAGTTCATGCAGATAATGATTGGGA-GTGCCTAAATTTATT 610
Query 1057 TGTTGAAGTGCCCGAGGAGAC-AATTCGTCTCGAGGCTCT-ACAAGAGGCAAATAGGA-G 1113
| | ||||| |||||||||| | || ||||||||| | | ||||||||||||||||| |
Sbjct 611 GGCTAAAGTGTCCGAGGAGACGACTT-GTCTCGAGG-TTTCACAAGAGGCAAATAGGAGG 668
Query 1114 -G-TCACTGGTCTCCGACACAGAGCTGGACCTCGAGCTCCGGTTGTAACTT 1162
| ||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 669 AGCTCACTAGTCTCGGACACAGAGCTGGACCTCGAGCTCCGGTTGTCACTT 719
> AT2G18810.1 | Symbols: | Domain of unknown function (DUF313)
| chr2:8147939-8149469 REVERSE LENGTH=705
Length=705
Score = 254 bits (137), Expect = 2e-66
Identities = 228/269 (85%), Gaps = 17/269 (6%)
Strand=Plus/Plus
Query 625 aaaaa-aga-a-acattacaaaaaGATTAA-TGACAGTGACAAAGGAGCGGATGTGACCT 680
||||| ||| | |||||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct 306 AAAAATAGATAGACATTACAAAAAGA-TAAGTGACAGTGACAAAGGAGCGGATGTGATCT 364
Query 681 TGGTGAATTCTAAGGGTCAACA-ATGGAAGCTAAACCTCAGGAGATGGGATATGTGGTCC 739
|||||||||| |||||| ||| | ||||||| || |||| ||||||||||||| |||
Sbjct 365 TGGTGAATTCCGAGGGTCTACAGA-GGAAGCTTAAGCTCAAGAGATGGGATATGACTTCC 423
Query 740 ACTTTCAACTACGTCTT-GGCTTCAGGATGGAACAAGGTCGTCCCCGGTAACACTCTAGA 798
|||| |||||||||||| || |||||||||||||||||||||| ||| |||| ||||||
Sbjct 424 ACTTCCAACTACGTCTTAGG-TTCAGGATGGAACAAGGTCGTCACCGAAAACATTCTAGA 482
Query 799 GGA-AGGC-CTGAGGCTTCGGCTCTGGTCCTTCCACTCCCAAGACAAGCTCTATATT-GC 855
|| |||| | ||||||||||||||||||||||||||||| ||||| ||||| | || ||
Sbjct 483 -GACAGGCAC-GAGGCTTCGGCTCTGGTCCTTCCACTCCCCAGACATGCTCTTT-TTCGC 539
Query 856 TCTAGTTCCT-CTGGATCCAGCTCCAGCT 883
|| |||| | | | |||||| || ||||
Sbjct 540 CCTCGTTCTTTCAG-ATCCAGATCTAGCT 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5