BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933737
Length=1609
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31865.2 | Symbols: PARG2 | poly(ADP-ribose) glycohydrolase ... 1893 0.0
> AT2G31865.2 | Symbols: PARG2 | poly(ADP-ribose) glycohydrolase
2 | chr2:13546596-13549536 REVERSE LENGTH=1857
Length=1857
Score = 1893 bits (1025), Expect = 0.0
Identities = 1152/1214 (95%), Gaps = 6/1214 (0%)
Strand=Plus/Plus
Query 6 TTTCAGGAAATAAGGATGGAACAGAGGACAGATCTTAGGTCAATTCTTCAGTATTTGCCT 65
||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 50 TTTCAGGCAATAAGGATGGAACTGAGGGCAGATCTTAGGTCAATTCTTCAGTATTTGCCT 109
Query 66 CTTGTGGCTCAGTCTTCATCTCTAGTTTGGCCACCTTCTGTTGAAGAAGAGCTCCAAACA 125
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 110 CTTGTGGCTCAGTCTTCATCACTAGTTTGGCCACCTTCTGTCGAAGAAGAGCTCCAAACA 169
Query 126 ATGTCTAGAGGACCGAGTGAGTCAATGGTTAACTCAGGG-GAGGCTCTTGCCTTGCATAT 184
|| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 170 ATATCTAGAGGACCGAGTGAGTCAATGGTTAACTC-GGGAGAGGCTCTTGCCTTGCATAT 228
Query 185 CACGGATATTCAAAAATCCCTCTCCTTGAATGCATCTGATCTCGCACCTTATGCGTTACA 244
|||| |||| | ||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 229 CACGAATATGCGGAAATCTCTCTCCTTGAATGCATCTGATCTCGCCCCTTATGCATTACA 288
Query 245 AGGGTATGCTCTTTTCTTTGACAAGAAAATTTCCAGAGAAGAGTCGGCCAACTTTTTTGG 304
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 289 AGGGTATGGTCTTTTCTTTGACAAGAAAATTTCCAGAGAAGAGTCGGCAAACTTTTTTGG 348
Query 305 TGAGGTGGTTCCTGCATTGTGCAGATTACTTCTCCAGTTACCTTCCCTGTTAGAAAAGCA 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 349 TGAGGTGGTTCCTGCATTGTGCAGATTACTTCTCCAGTTACCTTCCATGTTAGAAAAACA 408
Query 365 CTATCAGAAGGCAGATCATGTTCTTGATGGAGTTACGTCGGGGCTTCGCCTATTAGGCCC 424
||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||
Sbjct 409 CTATCAGAAGGCAGACCATGTTCTTGATGGAGTTAAGTCCGGGCTTCGTCTATTAGGCCC 468
Query 425 TCAAGAAGCTGGAATTGTGTTACTTAGCCAGGAGTTGATTGCAACTCTTCTTGCATGTTC 484
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 469 TCAAGAAGCTGGAATTGTGTTACTTAGCCAGGAGTTGATTGCAGCTCTTCTTGCGTGTTC 528
Query 485 CTTCTTTTGTTTGTTCCCTGAAGTTGACAGACGCTTAAATAAACTTCAAGGAATCAACTT 544
||||||||| ||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 529 CTTCTTTTGCTTGTTCCCTGAAGTTGACAGAAGCTTAAAGAATCTTCAAGGAATCAACTT 588
Query 545 TGA-TGGATTGTTTTCGTTTCCATATATGCGTGACTGCACAAAGCAAGAAAACAAAATAA 603
| | |||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||
Sbjct 589 T-AGTGGATTGTTTTCGTTTCCGTATATGCGTCACTGCACGAAGCAAGAAAACAAAATAA 647
Query 604 AGTGCCTTATCCATTACTTTGGAAGAATATGTCGATGTATGCCCACCGGCTTTGTTTCAT 663
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 648 AGTGCCTTATCCATTACTTTGGAAGAATATGTCGATGGATGCCCACCGGCTTTGTTTCAT 707
Query 664 TTGAGAGGAAAATTCTTCCACTGGAATACCTTCCTCACTTTGTTTCTTATCCTGGGGCTG 723
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 708 TTGAGAGGAAAATTCTTCCACTGGAATACCATCCTCACTTTGTTTCTTATCCCAAGGCTG 767
Query 724 ATTCATGGGCTAATTCTGTCACCCCACTTTGCTCTATTGAGGTTCACACCTCGGGAGCTA 783
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 768 ATTCGTGGGCTAATTCTGTCACCCCACTTTGCTCCATTGAGATTCACACCTCGGGAGCTA 827
Query 784 TAGAAGATCAACCCGGTGAAGCTCTTGAAGTGGATTTTGCAGATGAGTTTTTTGGAGGCC 843
||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 828 TAGAAGATCAACCTTGTGAAGCTCTTGAAGTAGATTTTGCAGATGAGTATTTTGGAGGCC 887
Query 844 TTACTCTGAGTTATGATACTCTACAGGAAGAAATAAGGTTCGTGATCAACCCGGAACTTA 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TTACTCTGAGTTATGATACTCTACAGGAAGAAATAAGGTTCGTGATCAACCCGGAACTTA 947
Query 904 TCGCTGGCATGATCTTTTTGCCTCGTATGGATGCAAATGAAGCGATTGAGATTGTTGGTG 963
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 948 TCGCTGGCATGATCTTTTTGCCTCGTATGGATGCAAATGAAGCAATTGAGATTGTTGGTG 1007
Query 964 TTGAAAGATTTTC-GCGTTATACAGGGTATGGACCTTCGTTCCAATATGCTGGCGATTAC 1022
||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1008 TTGAAAGATTTTCAG-GTTATACAGGGTATGGGCCTTCGTTCCAATATGCTGGTGATTAC 1066
Query 1023 ACAGACAAGAAGGATTTAGACATTTTCAAGAGGCGAAAAACGAGAGTCATAGCTATAGAT 1082
|||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1067 ACAGACAACAAGGACTTAGACATTTTCAGGAGGCGAAAAACAAGAGTCATAGCTATAGAT 1126
Query 1083 GCCATGCCTGGCCCAGGAATGGGACAGTACAAACTTGATGCCCTCATTCGAGAGGTTAAC 1142
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 GCCATGCCTGACCCAGGAATGGGACAGTACAAACTTGATGCCCTCATTCGAGAGGTTAAT 1186
Query 1143 AAGGCTTTTAGCGGATACATGCATCAATGTAAATATAAAATCGATGTTATGCATCAGCCT 1202
|||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |||
Sbjct 1187 AAGGCTTTTAGCGGATACATGCATCAATGTAAATATAATATCGATGTTAAGCATGATCCT 1246
Query 1203 GAGGCATTATCTTC 1216
||||||| ||||||
Sbjct 1247 GAGGCATCATCTTC 1260
Score = 641 bits (347), Expect = 0.0
Identities = 377/392 (96%), Gaps = 0/392 (0%)
Strand=Plus/Plus
Query 1218 CATGTTCCTCTTACATCAGATTCTGCGAGCCAAGTAATAGAAAGCTCTGATCGATGGTGT 1277
||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||
Sbjct 1292 CATGTTCCTCTTACATCAGATTCTGCGAGCCAAGTTATAGAAAGCTCTCATAGATGGTGT 1351
Query 1278 ATTGATCATGAAGAGAAGAAGATTGGTGTAGCTACAGGGAACTGGGGATGCGGTGTGTTT 1337
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1352 ATCGATCATGAAGAGAAAAAGATTGGTGTAGCTACAGGGAACTGGGGCTGCGGTGTGTTT 1411
Query 1338 GGAGGTGATCCAGAACTAAAGATCATGCTTCAGTGGCTTGCCATTTCACAGTCAGGAAGA 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 GGAGGTGATCCAGAACTAAAGATCATGCTTCAGTGGCTTGCCATTTCACAGTCAGGAAGA 1471
Query 1398 CCCTTCATGTCATACTACACCTTTGGCCTCCAAGCCCTGCAAAATCTCAATCAGGTGATC 1457
||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct 1472 CCCTTCATGTCATACTATACCTTTGGCCTCCAAGCCTTACAAAATCTCAATCAGGTGATC 1531
Query 1458 GAAAGGGTCGCTTTGCAAGAAATGACTGTAGGAGACCTTTGGAAAAAGCTAGTTGAGTAT 1517
|||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1532 GAAATGGTCGCTTTACAAGAAATGACTGTAGGAGACCTATGGAAAAAACTAGTTGAGTAT 1591
Query 1518 TCTTCAGAGAGGCTCAGCAGAAGAACATGGCTTGGCTTCTTCTCGTGGCTCATGACCTCA 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 TCTTCAGAGAGGCTCAGCAGAAGAACATGGCTTGGCTTCTTCTCGTGGCTCATGACCTCA 1651
Query 1578 CTGTCTACCTAGAGGAAAAATTGAGTCAGAGT 1609
|||||||||||||| ||||||||||||| |||
Sbjct 1652 CTGTCTACCTAGAGTAAAAATTGAGTCAAAGT 1683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79467462735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5