BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933740
Length=2048
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31890.1 | Symbols: ATRAP, RAP | RAP | chr2:13556500-1355976... 3216 0.0
> AT2G31890.1 | Symbols: ATRAP, RAP | RAP | chr2:13556500-13559767
REVERSE LENGTH=2668
Length=2668
Score = 3216 bits (1741), Expect = 0.0
Identities = 1951/2053 (95%), Gaps = 12/2053 (1%)
Strand=Plus/Plus
Query 4 TTCTCCGATAGAAGAAGATGGAGTGTGTAGTTCCATTCCGGCGGTGCTTCTCTCTCAATC 63
||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 36 TTCTCAGATAGAAGAAGATGGAGTGTGTAGTTCCATTCCGGCGATGCTTCTGTCTCAATC 95
Query 64 CGCCGGAGATACGCCACCGCATCTTTAACCACAGTCGCCGCTATCTCCATCTTTCTCTCT 123
||||||||| ||||||||| ||| ||||||||| | ||| |||||||| |||||||||
Sbjct 96 CGCCGGAGACACGCCACCGTATCGTTAACCACAACCACCGAAATCTCCATATTTCTCTCT 155
Query 124 CCTCATCCTCTTTCGCATCAGGGCTTTGGCCTGTCGCTGATAAGAAGTATCGATTACTTG 183
|||| |||||||||||||||||| ||| |||| | || |||||||||||||||| |||
Sbjct 156 CCTCCTCCTCTTTCGCATCAGGGATTTTGCCTCTTTCTAATAAGAAGTATCGATTTGTTG 215
Query 184 GTCCACTAGCACAGAGGAGTTCCTTGCATAGCCGTTCGGGCTCTCTCAAGCACCTTCCTT 243
|||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 216 GTCCTCTAGCACAGAGGAGTTCCTTGCATCGCCGTACGGACTCTCTCAAGCACCTTCCTT 275
Query 244 TTTCCGTGAATTCGTCTGTGATTGGTAACTCTGAGGAAGAA---G-AG--GA-G--GATG 294
||||||||||| ||||||||||||||||||| ||||||||| | || || | ||||
Sbjct 276 TTTCCGTGAATGCGTCTGTGATTGGTAACTCGGAGGAAGAAGTGGAAGAAGAGGATGATG 335
Query 295 ATGCGGACTGGGAGGCAGAATTTCTTGGGGAGATTGATCCATTGGATATTCAACCTCCGA 354
||| ||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 336 ATGGGGACTGGGAAGCAGAGTTTCTCGGGGAGATTGATCCGTTGGATATTCAACCTCCGA 395
Query 355 AGAAGAGGAAAAAGCAGAAGAATTCGAAAGCGCTTGAGGACACTGAAGGGATGGATTGGT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 AGAAGAGGAAAAAGCAGAAGAATTCGAAAGCGCTTGAGGACACTGAAGGGATGGATTGGT 455
Query 415 GTGTAAGGGCAAGGAAGATTGCACTTAAATCGATTGAGGCCAGAGGGTTGTCTTCTAGAA 474
|||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 456 GTGTAAGGGCAAGGAAAATTGCACTTAAATCGATTGAGGCAAGAGGGTTATCTTCTAGAA 515
Query 475 TGGCGGAGATGATGCCATTgaagaagaagaaaaagaaaaagagcaagaaagtaattgtaa 534
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 516 TGGCGGAGGTGATGCCATTGAAGAAGAAGAAAAAGAAAAAGAGCAAGAAAGTCATTGTAA 575
Query 535 agaaagaaaaggtcaaaagtagaagtaTTCTTGAAGATGATTTTGATACCGAGGACGAAG 594
||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 576 AGAAAGACAAGGTCAAAAGTAAAAGTATTCCAGAAGATGATTTTGATACCGAGGACGAAG 635
Query 595 ATTTGGATTTTGAAGATGGATTGGTGGAGGATAAGATGGGGGATCTGCGGAAGAGAGTTA 654
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 636 ATTTGGATTTTGAAGATGGATTTGTGGAGGATAAGATGGGGGATCTACGGAAGAGAGTTA 695
Query 655 GCTCATTAGCTGGTGGAATGTTTGAGGAAAAGAAGGAGAAGATGAAGGAACAATTAGCTC 714
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 696 GCTCATTAGCTGGTGGAATGTTTGAGGAAAAGAAGGAGAAGATGAAGGAGCAATTAGCTC 755
Query 715 AGAGGCTATCCCAATTTTCAGGACCTTCTGATCGTATGAAGGAAGTCAACCTGAACAAAG 774
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 756 AGAGGCTATCCCAGTTTTCAGGACCTTCTGATCGTATGAAGGAAATCAACCTGAACAAAG 815
Query 775 CTATAATAGAAGCACAGACTGCTGAAGAGGTATTGGAAGTAACAGCTGAGACAATAATGG 834
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 816 CTATAATAGAAGCACAGACTGCTGAAGAGGTATTGGAAGTAACTGCTGAGACAATCATGG 875
Query 835 CTGTCGCCAAAGGTTTAAGTCCATCGCCTTTGTCTCCTCTAAACATTGCTACTGCACTCC 894
|||| |||||||||||||||||||| |||||||||||| |||| |||||||||||||| |
Sbjct 876 CTGTTGCCAAAGGTTTAAGTCCATCACCTTTGTCTCCTTTAAATATTGCTACTGCACTTC 935
Query 895 ACCGAATTGCTAAGAATATGGAGAAAGTTTCGATGATGAGAACTCGTAGGCTTGCATTTG 954
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 936 ACCGAATTGCCAAGAATATGGAGAAAGTTTCAATGATGAGAACTCGTAGGCTTGCATTTG 995
Query 955 CTCGGCAAAGAGAGATGTCAATGCTTGTTGCTCTTGCAATGACATGTCTACCGGAATTTT 1014
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 996 CTCGGCAAAGAGAGATGTCAATGCTTGTTGCTCTTGCAATGACATGTCTACCAGAATGTT 1055
Query 1015 CAGCTCAAGGCATCTCAAATATTTCTTGGGCCTTGTCCAAAATCGGGGGTGAATTGCTTT 1074
||||||||||||||||||||||||||||||| || |||||||| || ||||||||||| |
Sbjct 1056 CAGCTCAAGGCATCTCAAATATTTCTTGGGCATTATCCAAAATTGGAGGTGAATTGCTAT 1115
Query 1075 ATTTGACTGAGATGGATAGAGTTGCAGAAGTAGCCACATCAAAGGTTGGG-GAGTTCAAT 1133
||||||| ||||||||||| ||||||||||| ||||||||||||| |||| |||||||||
Sbjct 1116 ATTTGACAGAGATGGATAGGGTTGCAGAAGTTGCCACATCAAAGG-TGGGTGAGTTCAAT 1174
Query 1134 TCTCAAAATGTTGCTAACATTGCAGGGGCGTTTGCTTCCATGCGGCATTCTGCTCCAGAA 1193
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1175 TCTCAGAATGTTGCTAATATTGCTGGGGCGTTTGCTTCCATGCGGCATTCTGCTCCAGAA 1234
Query 1194 CTCTTTGCTGAGTTGTCAAAGAGGGCATCTACTATTATCATTACCTTTAAGGGCCAAGAG 1253
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1235 CTCTTTGCTGAGTTGTCAAAGAGGGCATCTACTATTATCAATACCTTTAAGGGTCAAGAG 1294
Query 1254 ATTGCTCAACTATTGTGGGCATTTGCCTCACTTTATGAGCCAGCTGATCCTTTGCTTGAA 1313
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 ATTGCTCAACTATTGTGGTCATTTGCCTCACTTTATGAGCCAGCTGATCCTTTGCTTGAA 1354
Query 1314 TCTTTGGATAGTGCTTTCAAAAGCAGTGACCAGTTCAAGTGTTACTTGACAAAAGAAATA 1373
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1355 TCTTTGGATAGTGCATTCAAAAGCAGTGACCAGTTCAAGTGTTACTTGACGAAAGAAATA 1414
Query 1374 ACAAACTCTGATGAAGTAGTGGATGTTGAAGTAAGCGATGATGCTTCAGGATCTCCAGCA 1433
||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct 1415 ACAAACTCTGATGAAGTAGTGGATGCTGAAGTAAGCGATGATGTTTCAAGATCTCCAGCA 1474
Query 1434 CTTAGCTTTAACAGGGACCAGCTTGGAAACATAGCATGGTCTTATGCTGTTCTTGGGCAA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 CTTAGCTTTAACAGGGACCAGCTTGGAAACATAGCATGGTCTTATGCTGTTCTTGGGCAA 1534
Query 1494 GTGGAGCGACCTTTCTTTGCCAATATATGGAATACTTTAACCACCTTGGAGGAGCAAAGG 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 GTGGAGCGACCTTTCTTTGCCAATATATGGAATACTTTAACCACCTTGGAGGAGCAAAGG 1594
Query 1554 CTTTCAGAACAGTATAGGGAAGATGTCATGTTTGCTTCTCAGGTCTATCTTGTGAATCAG 1613
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1595 CTTTCAGAACAGTATAGGGAAGATGTCATGTTTGCTTCTCAGGTGTATCTTGTGAATCAG 1654
Query 1614 TGCTTGAAGCTTGAGTGCCCCCACCTTCAGTTGTCACTTTGTCATGAACTCGAAGAAAAA 1673
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1655 TGCTTGAAGCTTGAGTGCCCCCACCTTCAGTTGTCACTTTGTCAAGAACTCGAAGAAAAA 1714
Query 1674 ATAAGCCGTGCAGGAAAAACCAAAAGATTCAATCAAAAAATAACCTCGTCTTTTCAGAAA 1733
|||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1715 ATAAGCCGCGCAGGAAAAACCAAAAGATTCAATCAGAAAATAACCTCATCGTTTCAGAAA 1774
Query 1734 GAAGTTGGACGCCTTCTAATAAGTACAGGGCTTGATTGGGCTAAAGAACATGATGTGGAT 1793
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 GAAGTTGGACGCCTTCTTATAAGTACAGGGCTTGATTGGGCTAAAGAACATGATGTGGAT 1834
Query 1794 GGCTACACCGTGGATGTTGCTCTGGTCGAGAAGAAAGTTGCTTTAGAAATCGACGGGCCA 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 GGCTACACCGTGGATGTTGCTCTGGTCGAGAAGAAAGTTGCTTTAGAAATCGACGGGCCA 1894
Query 1854 ACTCATTTTTCAAGAAACTCTGGACTACCATTAGGGCATACAATGCTGAAGCGGCGATAT 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1895 ACTCATTTTTCAAGAAACTCTGGACTACCATTAGGGCATACAATGCTGAAGCGGCGATAT 1954
Query 1914 GTTGCCGCTGCTGGATGGAAAGTGGTATCTTTGTCTCTTCAAGAGTGGGAAGAACATGAA 1973
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1955 GTTGCTGCTGCTGGATGGAAAGTGGTATCTCTGTCTCTTCAAGAGTGGGAAGAACATGAA 2014
Query 1974 GGCAGCCACGAACAGCTAGAATATTTGAGGGAGATTCTCAACGGCTGCATATAAAGAAGA 2033
||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 2015 GGCAGTCATGAACAGCTAGAATATTTGAGGGAGATTCTCACCGGCTGCATATAGAGAAGA 2074
Query 2034 CA-GTAACGAAAC 2045
|| ||||| ||||
Sbjct 2075 CAAGTAACCAAAC 2087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101505501990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5