BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933741

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04560.1 | Symbols:  | transferases, transferring glycosyl g...   281    1e-75


> AT2G04560.1 | Symbols:  | transferases, transferring glycosyl 
groups | chr2:1590306-1592667 REVERSE LENGTH=1418
Length=1418

 Score =  281 bits (152),  Expect = 1e-75
 Identities = 183/198 (92%), Gaps = 2/198 (1%)
 Strand=Plus/Plus

Query  4     ACTACTCTTGGATGAAAAGATGAGAAAAAGACAAGTTGTTGGTGCCGAGAAGTTGATACA  63
             ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct  1203  ACTACTCTTGGATGAAAAGATGAGAGAAAGACAAGTTGTTGGTGCTGAGAAGTTGATACA  1262

Query  64    GCTATTGCATCCGTCAG-AAGACAGAATGGGAAACTCCATTCATTGCACTGGTTTGGAAT  122
             ||| ||||||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct  1263  GCTCTTGCATCCGTCAGAAAG-CAGAATGGGCAACTCAATTCATTGCACTGGTTTGGAAT  1321

Query  123   CTCATCTATATACACCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGTCAAGCACT  182
             |||||| |||||| ||||||||||||||||||||||||||||||||||||| || ||  |
Sbjct  1322  CTCATCGATATACGCCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGCCAGGCGTT  1381

Query  183   AAAAACTCTCGTGAATCA  200
             ||||||| |||||| |||
Sbjct  1382  AAAAACTATCGTGAGTCA  1399



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9104544531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5