BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933745

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31930.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   627    4e-179


> AT2G31930.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:13577555-13578248 
FORWARD LENGTH=694
Length=694

 Score =  627 bits (339),  Expect = 4e-179
 Identities = 409/442 (93%), Gaps = 7/442 (2%)
 Strand=Plus/Plus

Query  17   TAACCATGGGAGGTGAAGTAATAAACCCAACCAAGCCACGGTTTGATCTAAGCATGTCAA  76
            ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct  7    TAACCATGGGAAGTGAAGTAGTAAACCCGACCAAGCCACGGTTTGATCTAAGCATGTCGA  66

Query  77   AAAGAACTCGGAAACCATGGTCTAGTCTCATCAACGATACGCATCACCATGAC-ATCTCC  135
            |||||||||| |||||||||||||||||||||||||||| ||||||||||| | || | |
Sbjct  67   AAAGAACTCGAAAACCATGGTCTAGTCTCATCAACGATATGCATCACCATG-CAATATGC  125

Query  136  ACGCAAAGCTCACAACCGAAACCAGACAAAGAACAAGAGCAAATCGAAGACAAAGAGATT  195
            || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  126  ACCCAAAGCTCACAACCAAAACCAGACAAAGAACAAGAGCAAATCGAAGACAAAGAGATT  185

Query  196  GATCGTAAGAGTTTGAACAATCTGATGAGATACGAGGAGAAGCCAAATGGAGAAGCTAAT  255
            ||||||||||||||||||||||||||||||| ||| |||||    |||||||||||| ||
Sbjct  186  GATCGTAAGAGTTTGAACAATCTGATGAGATGCGATGAGAAATTGAATGGAGAAGCTGAT  245

Query  256  GTTAACAACGACAAGAGCTCTCTAGATCAACATTTCG-GTGATGACGAGGGGATCAAGCA  314
            ||||||||| | | ||||||||||||||||||||||| | |||| |||||||||||||| 
Sbjct  246  GTTAACAAC-A-A-GAGCTCTCTAGATCAACATTTCGAG-GATGGCGAGGGGATCAAGCC  301

Query  315  GACGATGCAATTGGTGGTGAAGAAAGAGAAGCAAGGTGGTGTGAAATTCAAAGGTATGAT  374
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct  302  GACGATGCAATTGGTGGTGAAGAAAGAGAAGCAAGGTGGTTTGAAATTCAAAGGTATGGT  361

Query  375  GGGTCGATATGTTAAGGTTTGGAGCGGTTTGATAAAGGCCAAGCGTGACCGCAAAACGCC  434
            |||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||
Sbjct  362  GGGTCGATATGTTAAGGTCTGGAGCGGTTTGATAAAGGCCAAACGTGACCACAAATCGCC  421

Query  435  GGTCTTACGGTTTAAAACTTGA  456
            |||||| |||||||||||||||
Sbjct  422  GGTCTTTCGGTTTAAAACTTGA  443



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22655600297


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5