BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933747

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31945.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   353    5e-97


> AT2G31945.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant 
structures; EXPRESSED DURING: 4 anthesis, petal differentiation 
and expansion stage; BEST Arabidopsis thaliana protein match 
is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits 
to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:13581581-13582126 FORWARD 
LENGTH=546
Length=546

 Score =  353 bits (191),  Expect = 5e-97
 Identities = 238/260 (92%), Gaps = 5/260 (2%)
 Strand=Plus/Plus

Query  1    TTTT-TTATCTATTACAACAAATGGACGGAGGCTTAGGAACGATGTTGATGAAGGTGGCC  59
            |||| |||||||||||||| |||||| |||||||| |||||||||||||||||||| |||
Sbjct  90   TTTTCTTATCTATTACAACCAATGGATGGAGGCTTGGGAACGATGTTGATGAAGGTTGCC  149

Query  60   TTATTTGCTCTGGTACAAGGTTTGGTGTATCTCATCCTCTCGAAATCGTCGAAGGTTTTC  119
            |||||||| || || ||||||||||||||||||||||||| ||||||||||| |||||| 
Sbjct  150  TTATTTGCCCTAGTTCAAGGTTTGGTGTATCTCATCCTCTTGAAATCGTCGAGGGTTTT-  208

Query  120  T-CTACATCGAATTCGTTGAGAAA-GGCTTACAGTTTCCGGCCGATGAGGTCCGTCAGCA  177
            | ||| |||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||
Sbjct  209  TGCTAGATCGAATTCGTTGA-AAAGGGCTTACAGTTTCCGACCGATGAGGTCAGTCAGCA  267

Query  178  TCCGCCGGATTCTGGCGTCACTTCAGGATATTCCTGCTGGCGACGATATGTCTCCTTCAT  237
            |||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct  268  TCCGTCGGATTCTGGCGGCGCTTCAGGATATTCCTGCTGGCGACGATATGTCTCCTTCAT  327

Query  238  CTAACGGCtcttcttcttct  257
            ||||||| || |||||||||
Sbjct  328  CTAACGGGTCCTCTTCTTCT  347



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15633269939


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5