BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933765
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32030.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 933 0.0
> AT2G32030.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr2:13632468-13633335 REVERSE LENGTH=868
Length=868
Score = 933 bits (505), Expect = 0.0
Identities = 575/609 (94%), Gaps = 4/609 (1%)
Strand=Plus/Plus
Query 1 AAGTAACCAAGAACAAGTCAATGGAGATCGACTCATCTAGTATGATCAAACTGGAGACTC 60
||||||||||||| |||||||||||||| |||||| ||| || |||||||| |||||| |
Sbjct 75 AAGTAACCAAGAAAAAGTCAATGGAGATGGACTCAACTACTACGATCAAACCGGAGACCC 134
Query 61 TATCCACCGTGAGTTCCTCACCAT-CGGAGAAAATCCATCTCCGGCCAATGACTCTTTCC 119
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 135 TATCCACCGTGAGTTCCTCACC-TCCGGAGAAAATCCATCTCCGGCCAATGACTCTTTCC 193
Query 120 GACGTCGACGATTTCATGGTCTGGGCCACTGACTCAAACGTCACACGCTTTTGCACGTGG 179
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 194 GACGTCGACGATTTCATGGTTTGGGCCACTGACTCAAACGTCACACGCTTTTGCACGTGG 253
Query 180 GAGCCTTACACTAGCCGAGAAGCCGCAATCGCGTACTTAAACGACG-TCGTTTTGCCACA 238
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 254 GAGCCTTACACTAGCCGAGAAGCCGCGATCGCGTACTTAAACGACGCTC-TTTTGCCACA 312
Query 239 CCCTTGGCTCAGAGCTATATGCTTAGATAACGACCGTCCGATCGGCTCGATCTCCGTAAC 298
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 313 CCCTTGGCTTAGAGCTATATGCTTAGATAACGACCGTCCGATTGGCTCGATCTCCGTAAC 372
Query 299 GCCAGTTGATAAGATCAGAGGAGAGATTGGTTATGTCCTCGGAAGCAAGTACTGGGGGAA 358
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 373 GCCAGTCGATGAGATCAGAGGAGAGATTGGTTATGTCCTCGGAAGCAAGTATTGGGGGAA 432
Query 359 AGGGATAGCGACGGAGGCGGTGAGGCTTGTGGCTGCGGAGATATTCAAGGAGAACCCGGA 418
|||||| || || || ||||||||||||||||| | |||||||||||||||||| || ||
Sbjct 433 AGGGATCGCCACTGAAGCGGTGAGGCTTGTGGCGGGGGAGATATTCAAGGAGAAGCCAGA 492
Query 419 GATGGAGAGGCTTGAGGCACTTGTTGACGTTGACAACGTCGGATCTCAAAAGGTTCTTGA 478
|||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 493 GATGCAGAGGCTTGAGGCACTTGTTGACGTTGACAATGTTGGATCTCAAAAGGTTCTTGA 552
Query 479 AAAAGTTGGGTTTGTGAGAGAAGGTGTTATGAGGAAATTTATGTATCTAAAAGGAAATGT 538
||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct 553 AAAAGTTGGGTTTGTGAAAGAAGGTGTGATGAGGAAATTTATGTATCTTAAAGGAAATGT 612
Query 539 TAGAGATATGGTCATGTTTAGTTTCTTGCCTTCTGATTCGTTGCACTGATCTAATTTGAA 598
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 613 TAGAGATATGGTCATGTTTAGTTTCTTGCCTTCTGATTCGTTGCACTGATCTGATTTGAA 672
Query 599 TCAACAAAT 607
| |||||||
Sbjct 673 TTAACAAAT 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29236273554
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5